The complete chloroplast genome of Tainia dunnii (Orchidaceae): genome structure and evolution
Tainia dunnii is a terrestrial orchid with high ornamental value. Herein, we assembled the complete chloroplast genome of Tainia dunnii by next-generation sequencing technologies. The complete chloroplast genome sequence of Tainia dunnii is 158,305 base pairs (bp) in length, including a pair of inve...
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2020-01-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2019.1693935 |
| _version_ | 1797639537517658112 |
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| author | Tai-Xiang Xie Xia Yu Qing-Dong Zheng Shan-Hu Ma Zhong-Jian Liu Ye Ai |
| author_facet | Tai-Xiang Xie Xia Yu Qing-Dong Zheng Shan-Hu Ma Zhong-Jian Liu Ye Ai |
| author_sort | Tai-Xiang Xie |
| collection | DOAJ |
| description | Tainia dunnii is a terrestrial orchid with high ornamental value. Herein, we assembled the complete chloroplast genome of Tainia dunnii by next-generation sequencing technologies. The complete chloroplast genome sequence of Tainia dunnii is 158,305 base pairs (bp) in length, including a pair of inverted repeat regions (IRs, 25,244 bp), one large single-copy region (LSC, 86,819 bp), one small single-copy region (SSC, 20,998 bp). Besides, the complete chloroplast genome contains 136 genes in total, including 88 protein-coding genes, 38 tRNA genes, and 8 rRNA genes. Phylogenetic analysis showed that Tainia dunnii has the closest relationship with Calanthe davidii and Calanthe triplicata. Our study lay a foundation for further research of Tainia dunnii. |
| first_indexed | 2024-03-11T13:18:09Z |
| format | Article |
| id | doaj.art-01e157d2f987414283cddc0ed3c0d8fe |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:18:09Z |
| publishDate | 2020-01-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-01e157d2f987414283cddc0ed3c0d8fe2023-11-03T10:38:53ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592020-01-01513410.1080/23802359.2019.16939351693935The complete chloroplast genome of Tainia dunnii (Orchidaceae): genome structure and evolutionTai-Xiang Xie0Xia Yu1Qing-Dong Zheng2Shan-Hu Ma3Zhong-Jian Liu4Ye Ai5Key Laboratory of National Forestry and Grassland Administration for Orchid Conservation and Utilization at College of Landscape Architecture, Fujian Agriculture and Forestry UniversityKey Laboratory of National Forestry and Grassland Administration for Orchid Conservation and Utilization at College of Landscape Architecture, Fujian Agriculture and Forestry UniversityKey Laboratory of National Forestry and Grassland Administration for Orchid Conservation and Utilization at College of Landscape Architecture, Fujian Agriculture and Forestry UniversityKey Laboratory of National Forestry and Grassland Administration for Orchid Conservation and Utilization at College of Landscape Architecture, Fujian Agriculture and Forestry UniversityKey Laboratory of National Forestry and Grassland Administration for Orchid Conservation and Utilization at College of Landscape Architecture, Fujian Agriculture and Forestry UniversityKey Laboratory of National Forestry and Grassland Administration for Orchid Conservation and Utilization at College of Landscape Architecture, Fujian Agriculture and Forestry UniversityTainia dunnii is a terrestrial orchid with high ornamental value. Herein, we assembled the complete chloroplast genome of Tainia dunnii by next-generation sequencing technologies. The complete chloroplast genome sequence of Tainia dunnii is 158,305 base pairs (bp) in length, including a pair of inverted repeat regions (IRs, 25,244 bp), one large single-copy region (LSC, 86,819 bp), one small single-copy region (SSC, 20,998 bp). Besides, the complete chloroplast genome contains 136 genes in total, including 88 protein-coding genes, 38 tRNA genes, and 8 rRNA genes. Phylogenetic analysis showed that Tainia dunnii has the closest relationship with Calanthe davidii and Calanthe triplicata. Our study lay a foundation for further research of Tainia dunnii.http://dx.doi.org/10.1080/23802359.2019.1693935chloroplast genomephylogenetic analysisorchidaceaetainia dunnii |
| spellingShingle | Tai-Xiang Xie Xia Yu Qing-Dong Zheng Shan-Hu Ma Zhong-Jian Liu Ye Ai The complete chloroplast genome of Tainia dunnii (Orchidaceae): genome structure and evolution Mitochondrial DNA. Part B. Resources chloroplast genome phylogenetic analysis orchidaceae tainia dunnii |
| title | The complete chloroplast genome of Tainia dunnii (Orchidaceae): genome structure and evolution |
| title_full | The complete chloroplast genome of Tainia dunnii (Orchidaceae): genome structure and evolution |
| title_fullStr | The complete chloroplast genome of Tainia dunnii (Orchidaceae): genome structure and evolution |
| title_full_unstemmed | The complete chloroplast genome of Tainia dunnii (Orchidaceae): genome structure and evolution |
| title_short | The complete chloroplast genome of Tainia dunnii (Orchidaceae): genome structure and evolution |
| title_sort | complete chloroplast genome of tainia dunnii orchidaceae genome structure and evolution |
| topic | chloroplast genome phylogenetic analysis orchidaceae tainia dunnii |
| url | http://dx.doi.org/10.1080/23802359.2019.1693935 |
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