Robust expansion of phylogeny for fast-growing genome sequence data.
Massive sequencing of SARS-CoV-2 genomes has urged novel methods that employ existing phylogenies to add new samples efficiently instead of de novo inference. 'TIPars' was developed for such challenge integrating parsimony analysis with pre-computed ancestral sequences. It took about 21 se...
Main Authors: | Yongtao Ye, Marcus H Shum, Joseph L Tsui, Guangchuang Yu, David K Smith, Huachen Zhu, Joseph T Wu, Yi Guan, Tommy Tsan-Yuk Lam |
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Format: | Article |
Language: | English |
Published: |
Public Library of Science (PLoS)
2024-02-01
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Series: | PLoS Computational Biology |
Online Access: | https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1011871&type=printable |
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