Characterization of the complete chloroplast genome of Suaeda salsa (Amaranthaceae/Chenopodiaceae), an annual succulent halophyte
Suaeda salsa, an annual succulent halophytic herb, is one of the major halophyte widely distributed in both saline inland and the intertidal zone. In this study, we report the complete chloroplast genome (plastome) of S. salsa. The plastome was 151,642 bp in length and comprises a large single-copy...
| Main Authors: | , , , , |
|---|---|
| Format: | Article |
| Language: | English |
| Published: |
Taylor & Francis Group
2019-07-01
|
| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2019.1623113 |
| _version_ | 1797639788348571648 |
|---|---|
| author | Xiao-Jian Qu Xiao-Tong Li Luo-Yan Zhang Xue-Jie Zhang Shou-Jin Fan |
| author_facet | Xiao-Jian Qu Xiao-Tong Li Luo-Yan Zhang Xue-Jie Zhang Shou-Jin Fan |
| author_sort | Xiao-Jian Qu |
| collection | DOAJ |
| description | Suaeda salsa, an annual succulent halophytic herb, is one of the major halophyte widely distributed in both saline inland and the intertidal zone. In this study, we report the complete chloroplast genome (plastome) of S. salsa. The plastome was 151,642 bp in length and comprises a large single-copy region (83,502 bp), a small single-copy region (17,780 bp), and a pair of inverted repeats (25,180 bp). It encodes 113 unique genes, including 79 protein-coding genes (PCGs), 30 tRNAs, and four rRNAs. The overall GC content of this plastome was 36.4%. Phylogenomic analysis based on 20 plastomes revealed that S. salsa was closely related to S. malacosperma. |
| first_indexed | 2024-03-11T13:22:06Z |
| format | Article |
| id | doaj.art-02721db63dd54adeb977f7e02fc278ec |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:22:06Z |
| publishDate | 2019-07-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-02721db63dd54adeb977f7e02fc278ec2023-11-03T10:06:47ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592019-07-01422133213410.1080/23802359.2019.16231131623113Characterization of the complete chloroplast genome of Suaeda salsa (Amaranthaceae/Chenopodiaceae), an annual succulent halophyteXiao-Jian Qu0Xiao-Tong Li1Luo-Yan Zhang2Xue-Jie Zhang3Shou-Jin Fan4Shandong Normal UniversityShandong Normal UniversityShandong Normal UniversityShandong Normal UniversityShandong Normal UniversitySuaeda salsa, an annual succulent halophytic herb, is one of the major halophyte widely distributed in both saline inland and the intertidal zone. In this study, we report the complete chloroplast genome (plastome) of S. salsa. The plastome was 151,642 bp in length and comprises a large single-copy region (83,502 bp), a small single-copy region (17,780 bp), and a pair of inverted repeats (25,180 bp). It encodes 113 unique genes, including 79 protein-coding genes (PCGs), 30 tRNAs, and four rRNAs. The overall GC content of this plastome was 36.4%. Phylogenomic analysis based on 20 plastomes revealed that S. salsa was closely related to S. malacosperma.http://dx.doi.org/10.1080/23802359.2019.1623113suaeda salsaplastomephylogenomics |
| spellingShingle | Xiao-Jian Qu Xiao-Tong Li Luo-Yan Zhang Xue-Jie Zhang Shou-Jin Fan Characterization of the complete chloroplast genome of Suaeda salsa (Amaranthaceae/Chenopodiaceae), an annual succulent halophyte Mitochondrial DNA. Part B. Resources suaeda salsa plastome phylogenomics |
| title | Characterization of the complete chloroplast genome of Suaeda salsa (Amaranthaceae/Chenopodiaceae), an annual succulent halophyte |
| title_full | Characterization of the complete chloroplast genome of Suaeda salsa (Amaranthaceae/Chenopodiaceae), an annual succulent halophyte |
| title_fullStr | Characterization of the complete chloroplast genome of Suaeda salsa (Amaranthaceae/Chenopodiaceae), an annual succulent halophyte |
| title_full_unstemmed | Characterization of the complete chloroplast genome of Suaeda salsa (Amaranthaceae/Chenopodiaceae), an annual succulent halophyte |
| title_short | Characterization of the complete chloroplast genome of Suaeda salsa (Amaranthaceae/Chenopodiaceae), an annual succulent halophyte |
| title_sort | characterization of the complete chloroplast genome of suaeda salsa amaranthaceae chenopodiaceae an annual succulent halophyte |
| topic | suaeda salsa plastome phylogenomics |
| url | http://dx.doi.org/10.1080/23802359.2019.1623113 |
| work_keys_str_mv | AT xiaojianqu characterizationofthecompletechloroplastgenomeofsuaedasalsaamaranthaceaechenopodiaceaeanannualsucculenthalophyte AT xiaotongli characterizationofthecompletechloroplastgenomeofsuaedasalsaamaranthaceaechenopodiaceaeanannualsucculenthalophyte AT luoyanzhang characterizationofthecompletechloroplastgenomeofsuaedasalsaamaranthaceaechenopodiaceaeanannualsucculenthalophyte AT xuejiezhang characterizationofthecompletechloroplastgenomeofsuaedasalsaamaranthaceaechenopodiaceaeanannualsucculenthalophyte AT shoujinfan characterizationofthecompletechloroplastgenomeofsuaedasalsaamaranthaceaechenopodiaceaeanannualsucculenthalophyte |