Complete chloroplast genome sequence of Scurrula notothixoides (Loranthaceae): a hemiparasitic shrub in South China
Scurrula notothixoides (Loranthaceae) is a hemiparasitic shrub distributed in forest margins of Southeast Asian countries. Here, we report and characterize the complete plastid genome sequence of S. notothixoides in an effort to provide genomic resources useful for the phylogenetic studies for Santa...
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2018-07-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2018.1471366 |
| _version_ | 1797640656610394112 |
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| author | Lang-Xing Yuan Jian-Hua Wang Chao-Rui Chen Kun-Kun Zhao Zhi-Xin Zhu Hua-Feng Wang |
| author_facet | Lang-Xing Yuan Jian-Hua Wang Chao-Rui Chen Kun-Kun Zhao Zhi-Xin Zhu Hua-Feng Wang |
| author_sort | Lang-Xing Yuan |
| collection | DOAJ |
| description | Scurrula notothixoides (Loranthaceae) is a hemiparasitic shrub distributed in forest margins of Southeast Asian countries. Here, we report and characterize the complete plastid genome sequence of S. notothixoides in an effort to provide genomic resources useful for the phylogenetic studies for Santalales. The complete plastome is 123,810 bp in length and contains the typical structure and gene content of angiosperm plastomes, including two inverted repeat (IR) regions of 23,101 bp, a large single copy (LSC) region of 71,448 bp and a small single copy (SSC) region of 6160 bp. The plastome contains 88 genes, consisting of 61 unique protein-coding genes, 23 unique tRNA genes and four unique rRNA genes. The overall A/T content in the plastome of S. notothixoides is 62.7%. Phylogenetic analyses were performed using the entire plastome, including spacers, introns, etc. and we recovered that S. notothixoides and Taxillus sutchuenensis was closely related. The complete plastome sequence of S. notothixoides will provide a useful resource for the phylogenetic studies for Santalales. |
| first_indexed | 2024-03-11T13:34:59Z |
| format | Article |
| id | doaj.art-027de7ee6a404ccca140f4a6f5bf4909 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:34:59Z |
| publishDate | 2018-07-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-027de7ee6a404ccca140f4a6f5bf49092023-11-02T15:57:23ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592018-07-013258058110.1080/23802359.2018.14713661471366Complete chloroplast genome sequence of Scurrula notothixoides (Loranthaceae): a hemiparasitic shrub in South ChinaLang-Xing Yuan0Jian-Hua Wang1Chao-Rui Chen2Kun-Kun Zhao3Zhi-Xin Zhu4Hua-Feng Wang5Institute of Tropical Agriculture and Forestry Hainan UniversityInstitute of Tropical Agriculture and Forestry Hainan UniversityInstitute of Tropical Agriculture and Forestry Hainan UniversityInstitute of Tropical Agriculture and Forestry Hainan UniversityInstitute of Tropical Agriculture and Forestry Hainan UniversityInstitute of Tropical Agriculture and Forestry Hainan UniversityScurrula notothixoides (Loranthaceae) is a hemiparasitic shrub distributed in forest margins of Southeast Asian countries. Here, we report and characterize the complete plastid genome sequence of S. notothixoides in an effort to provide genomic resources useful for the phylogenetic studies for Santalales. The complete plastome is 123,810 bp in length and contains the typical structure and gene content of angiosperm plastomes, including two inverted repeat (IR) regions of 23,101 bp, a large single copy (LSC) region of 71,448 bp and a small single copy (SSC) region of 6160 bp. The plastome contains 88 genes, consisting of 61 unique protein-coding genes, 23 unique tRNA genes and four unique rRNA genes. The overall A/T content in the plastome of S. notothixoides is 62.7%. Phylogenetic analyses were performed using the entire plastome, including spacers, introns, etc. and we recovered that S. notothixoides and Taxillus sutchuenensis was closely related. The complete plastome sequence of S. notothixoides will provide a useful resource for the phylogenetic studies for Santalales.http://dx.doi.org/10.1080/23802359.2018.1471366scurrula notothixoidesillumina sequencingplastomeloranthaceaephylogenetic analysissantalales |
| spellingShingle | Lang-Xing Yuan Jian-Hua Wang Chao-Rui Chen Kun-Kun Zhao Zhi-Xin Zhu Hua-Feng Wang Complete chloroplast genome sequence of Scurrula notothixoides (Loranthaceae): a hemiparasitic shrub in South China Mitochondrial DNA. Part B. Resources scurrula notothixoides illumina sequencing plastome loranthaceae phylogenetic analysis santalales |
| title | Complete chloroplast genome sequence of Scurrula notothixoides (Loranthaceae): a hemiparasitic shrub in South China |
| title_full | Complete chloroplast genome sequence of Scurrula notothixoides (Loranthaceae): a hemiparasitic shrub in South China |
| title_fullStr | Complete chloroplast genome sequence of Scurrula notothixoides (Loranthaceae): a hemiparasitic shrub in South China |
| title_full_unstemmed | Complete chloroplast genome sequence of Scurrula notothixoides (Loranthaceae): a hemiparasitic shrub in South China |
| title_short | Complete chloroplast genome sequence of Scurrula notothixoides (Loranthaceae): a hemiparasitic shrub in South China |
| title_sort | complete chloroplast genome sequence of scurrula notothixoides loranthaceae a hemiparasitic shrub in south china |
| topic | scurrula notothixoides illumina sequencing plastome loranthaceae phylogenetic analysis santalales |
| url | http://dx.doi.org/10.1080/23802359.2018.1471366 |
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