Complete genome sequence data of tropical thermophilic bacterium Parageobacillus caldoxylosilyticus ER4B
Parageobacillus caldoxylosilyticus, or previously identified as Geobacillus caldoxylosilyticus, is a thermophilic Gram-positive bacterium which can easily withstand growth temperatures ranging from 40 °C to 70 °C. Here, we present the first complete genome sequence of Parageobacillus caldoxylosilyti...
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| Format: | Article |
| Language: | English |
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Elsevier
2022-02-01
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| Series: | Data in Brief |
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| Online Access: | http://www.sciencedirect.com/science/article/pii/S2352340921010386 |
| _version_ | 1798025196123193344 |
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| author | Xin Jie Ching Nazalan Najimudin Yoke Kqueen Cheah Clemente Michael Vui Ling Wong |
| author_facet | Xin Jie Ching Nazalan Najimudin Yoke Kqueen Cheah Clemente Michael Vui Ling Wong |
| author_sort | Xin Jie Ching |
| collection | DOAJ |
| description | Parageobacillus caldoxylosilyticus, or previously identified as Geobacillus caldoxylosilyticus, is a thermophilic Gram-positive bacterium which can easily withstand growth temperatures ranging from 40 °C to 70 °C. Here, we present the first complete genome sequence of Parageobacillus caldoxylosilyticus ER4B which was isolated from an empty oil palm fruit bunch compost in Malaysia. Whole genome sequencing was performed using the PacBio RSII platform. The genome size of strain ER4B was around 3.9Mbp, with GC content of 44.31%. The genome consists of two contigs, in which the larger contig (3,909,276bp) represents the chromosome, while the smaller one (54,250bp) represents the plasmid. A total of 4,164 genes were successfully predicted, including 3,972 protein coding sequences, 26 rRNAs, 91 tRNAs, 74 miscRNA, and 1 tmRNA. The genome sequence data of strain ER4B reported here may contribute to the current molecular information of the species. It may also facilitate the discovery of molecular traits related to thermal stress, thus, expanding our understanding in the acclimation or adaptation towards extreme temperature in bacteria. |
| first_indexed | 2024-04-11T18:14:49Z |
| format | Article |
| id | doaj.art-02a57d94fbfe45bd939a02a51adeef8a |
| institution | Directory Open Access Journal |
| issn | 2352-3409 |
| language | English |
| last_indexed | 2024-04-11T18:14:49Z |
| publishDate | 2022-02-01 |
| publisher | Elsevier |
| record_format | Article |
| series | Data in Brief |
| spelling | doaj.art-02a57d94fbfe45bd939a02a51adeef8a2022-12-22T04:09:55ZengElsevierData in Brief2352-34092022-02-0140107764Complete genome sequence data of tropical thermophilic bacterium Parageobacillus caldoxylosilyticus ER4BXin Jie Ching0Nazalan Najimudin1Yoke Kqueen Cheah2Clemente Michael Vui Ling Wong3Biotechnology Research Institute, Universiti Malaysia Sabah, Jalan UMS, 88400 Kota Kinabalu, Sabah, MalaysiaSchool of Biological Science, Universiti Sains Malaysia, Persiaran Bukit Jambul, Bayan Lepas, Penang 11900, MalaysiaDepartment of Biomedical Science, Faculty of Medicine and Health Sciences, Universiti Putra Malaysia, 43400 UPM Serdang, Selangor Darul Ehsan, MalaysiaBiotechnology Research Institute, Universiti Malaysia Sabah, Jalan UMS, 88400 Kota Kinabalu, Sabah, Malaysia; Corresponding author.Parageobacillus caldoxylosilyticus, or previously identified as Geobacillus caldoxylosilyticus, is a thermophilic Gram-positive bacterium which can easily withstand growth temperatures ranging from 40 °C to 70 °C. Here, we present the first complete genome sequence of Parageobacillus caldoxylosilyticus ER4B which was isolated from an empty oil palm fruit bunch compost in Malaysia. Whole genome sequencing was performed using the PacBio RSII platform. The genome size of strain ER4B was around 3.9Mbp, with GC content of 44.31%. The genome consists of two contigs, in which the larger contig (3,909,276bp) represents the chromosome, while the smaller one (54,250bp) represents the plasmid. A total of 4,164 genes were successfully predicted, including 3,972 protein coding sequences, 26 rRNAs, 91 tRNAs, 74 miscRNA, and 1 tmRNA. The genome sequence data of strain ER4B reported here may contribute to the current molecular information of the species. It may also facilitate the discovery of molecular traits related to thermal stress, thus, expanding our understanding in the acclimation or adaptation towards extreme temperature in bacteria.http://www.sciencedirect.com/science/article/pii/S2352340921010386Parageobacillus caldoxylosilyticusComplete whole genome sequenceThermophileThermal stress |
| spellingShingle | Xin Jie Ching Nazalan Najimudin Yoke Kqueen Cheah Clemente Michael Vui Ling Wong Complete genome sequence data of tropical thermophilic bacterium Parageobacillus caldoxylosilyticus ER4B Data in Brief Parageobacillus caldoxylosilyticus Complete whole genome sequence Thermophile Thermal stress |
| title | Complete genome sequence data of tropical thermophilic bacterium Parageobacillus caldoxylosilyticus ER4B |
| title_full | Complete genome sequence data of tropical thermophilic bacterium Parageobacillus caldoxylosilyticus ER4B |
| title_fullStr | Complete genome sequence data of tropical thermophilic bacterium Parageobacillus caldoxylosilyticus ER4B |
| title_full_unstemmed | Complete genome sequence data of tropical thermophilic bacterium Parageobacillus caldoxylosilyticus ER4B |
| title_short | Complete genome sequence data of tropical thermophilic bacterium Parageobacillus caldoxylosilyticus ER4B |
| title_sort | complete genome sequence data of tropical thermophilic bacterium parageobacillus caldoxylosilyticus er4b |
| topic | Parageobacillus caldoxylosilyticus Complete whole genome sequence Thermophile Thermal stress |
| url | http://www.sciencedirect.com/science/article/pii/S2352340921010386 |
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