Characterization of the complete chloroplast genome of traditional Chinese herb, Solanum japonense Nakai. (Solanaceae)
Solanum japonense Nakai. (Solanaceae) is a traditional Chinese medicine and animal fodder in Asian continent. Here, the complete chloroplast genome sequence of S. japonense was determined by the Illumina Hiseq technology. The complete chloroplast genome of S. japonense was 155,415 bp and the GC cont...
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2021-01-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2020.1860713 |
| _version_ | 1797638983002357760 |
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| author | Xiaoxia Zhang Xiaofeng Zhang Huan Wang Shilong Chen Tingfeng Cheng Shengbo Shi Dangwei Zhou |
| author_facet | Xiaoxia Zhang Xiaofeng Zhang Huan Wang Shilong Chen Tingfeng Cheng Shengbo Shi Dangwei Zhou |
| author_sort | Xiaoxia Zhang |
| collection | DOAJ |
| description | Solanum japonense Nakai. (Solanaceae) is a traditional Chinese medicine and animal fodder in Asian continent. Here, the complete chloroplast genome sequence of S. japonense was determined by the Illumina Hiseq technology. The complete chloroplast genome of S. japonense was 155,415 bp and the GC content was 37.81%. The typical circular quadripartite structure was composed with two inverted repeat (IR) regions with 25,588 bp, a large single-copy (LSC) region (85,931 bp) and a small single-copy (SSC) region (18,344 bp). The chloroplast genome of S. japonense contained 132 unigenes, which contained 86 protein-coding genes, 37 tRNA and 8 rRNA genes and one pseudo-gene. Moreover, 183 SSRs were identified and 65% (119)of them located at LSC region. A Maximum-Likelihood (ML) phylogenetic analysis based on chloroplast genomes indicated that S. japonense was closely related to S.dulcamara, S.nigrum. Our results would provide a valuable resource for resource utilization and the phylogenetic studies of species of Dulcamara sect. in Solanaceae. |
| first_indexed | 2024-03-11T13:11:14Z |
| format | Article |
| id | doaj.art-02d5054eb39841e09270cf7a72619e24 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:11:14Z |
| publishDate | 2021-01-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-02d5054eb39841e09270cf7a72619e242023-11-03T14:08:18ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592021-01-016121121310.1080/23802359.2020.18607131860713Characterization of the complete chloroplast genome of traditional Chinese herb, Solanum japonense Nakai. (Solanaceae)Xiaoxia Zhang0Xiaofeng Zhang1Huan Wang2Shilong Chen3Tingfeng Cheng4Shengbo Shi5Dangwei Zhou6College of Medicine, Xi'an International UniversityCollege of Medicine, Xi'an International UniversityKey Laboratory of Adaptation and Evolution of Plateau Biota (AEPB), NorthwestInstitute of Plateau Biology, Chinese Academy of SciencesKey Laboratory of Adaptation and Evolution of Plateau Biota (AEPB), NorthwestInstitute of Plateau Biology, Chinese Academy of SciencesKey Laboratory of Adaptation and Evolution of Plateau Biota (AEPB), NorthwestInstitute of Plateau Biology, Chinese Academy of SciencesKey Laboratory of Adaptation and Evolution of Plateau Biota (AEPB), NorthwestInstitute of Plateau Biology, Chinese Academy of SciencesKey Laboratory of Adaptation and Evolution of Plateau Biota (AEPB), NorthwestInstitute of Plateau Biology, Chinese Academy of SciencesSolanum japonense Nakai. (Solanaceae) is a traditional Chinese medicine and animal fodder in Asian continent. Here, the complete chloroplast genome sequence of S. japonense was determined by the Illumina Hiseq technology. The complete chloroplast genome of S. japonense was 155,415 bp and the GC content was 37.81%. The typical circular quadripartite structure was composed with two inverted repeat (IR) regions with 25,588 bp, a large single-copy (LSC) region (85,931 bp) and a small single-copy (SSC) region (18,344 bp). The chloroplast genome of S. japonense contained 132 unigenes, which contained 86 protein-coding genes, 37 tRNA and 8 rRNA genes and one pseudo-gene. Moreover, 183 SSRs were identified and 65% (119)of them located at LSC region. A Maximum-Likelihood (ML) phylogenetic analysis based on chloroplast genomes indicated that S. japonense was closely related to S.dulcamara, S.nigrum. Our results would provide a valuable resource for resource utilization and the phylogenetic studies of species of Dulcamara sect. in Solanaceae.http://dx.doi.org/10.1080/23802359.2020.1860713solanum japonense nakai.chloroplast genomephylogenetic analysis |
| spellingShingle | Xiaoxia Zhang Xiaofeng Zhang Huan Wang Shilong Chen Tingfeng Cheng Shengbo Shi Dangwei Zhou Characterization of the complete chloroplast genome of traditional Chinese herb, Solanum japonense Nakai. (Solanaceae) Mitochondrial DNA. Part B. Resources solanum japonense nakai. chloroplast genome phylogenetic analysis |
| title | Characterization of the complete chloroplast genome of traditional Chinese herb, Solanum japonense Nakai. (Solanaceae) |
| title_full | Characterization of the complete chloroplast genome of traditional Chinese herb, Solanum japonense Nakai. (Solanaceae) |
| title_fullStr | Characterization of the complete chloroplast genome of traditional Chinese herb, Solanum japonense Nakai. (Solanaceae) |
| title_full_unstemmed | Characterization of the complete chloroplast genome of traditional Chinese herb, Solanum japonense Nakai. (Solanaceae) |
| title_short | Characterization of the complete chloroplast genome of traditional Chinese herb, Solanum japonense Nakai. (Solanaceae) |
| title_sort | characterization of the complete chloroplast genome of traditional chinese herb solanum japonense nakai solanaceae |
| topic | solanum japonense nakai. chloroplast genome phylogenetic analysis |
| url | http://dx.doi.org/10.1080/23802359.2020.1860713 |
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