Alkane Hydroxylase Gene (alkB) Phylotype Composition and Diversity in Northern Gulf of Mexico Bacterioplankton

Alkane Hydroxylase Gene (alkB) Phylotype Composition and Diversity in Northern Gulf of Mexico Bacterioplankton

Natural and anthropogenic activities introduce alkanes into marine systems where they are degraded by alkane hydroxylases expressed by phylogenetically diverse bacteria. Partial sequences for alkB, one of the structural genes of alkane hydroxylase, have been used to assess the composition of alkane...

Full description

Bibliographic Details
Main Authors:	Conor Blake Smith, Bradley B Tolar, James T Hollibaugh, Gary M King
Format:	Article
Language:	English
Published:	Frontiers Media S.A. 2013-12-01
Series:	Frontiers in Microbiology
Subjects:	Gulf of Mexico diversity bacterioplankton AlkB alkane hydroxylases
Online Access:	http://journal.frontiersin.org/Journal/10.3389/fmicb.2013.00370/full

Similar Items

An Overview of the Electron-Transfer Proteins That Activate Alkane Monooxygenase (AlkB)
by: Shoshana C. Williams, et al.
Published: (2022-02-01)

Functional Analysis of Novel <i>alkB</i> Genes Encoding Long-Chain <i>n</i>-Alkane Hydroxylases in <i>Rhodococcus</i> sp. Strain CH91
by: Wei Xiang, et al.
Published: (2023-06-01)

A novel alkane monooxygenase (alkB) clade revealed by massive genomic survey and its dissemination association with IS elements
by: Shaojing Wang, et al.
Published: (2022-09-01)

A novel strategy for partial purification of alkane hydroxylase from P. chrysogenum SNP5 through reconstituting its native membrane into liposome
by: Satyapriy Das, et al.
Published: (2024-02-01)

CrgA Protein Represses AlkB2 Monooxygenase and Regulates the Degradation of Medium-to-Long-Chain n-Alkanes in Pseudomonas aeruginosa SJTD-1
by: Nannan Ji, et al.
Published: (2019-03-01)

The role of demethylase AlkB homologs in cancer
by: Qiao Li, et al.
Published: (2023-03-01)

The AlkB Family: Potential Prognostic Biomarkers and Therapeutic Targets in Glioblastoma
by: Songshan Feng, et al.
Published: (2022-03-01)

Influence of compost amendments on the diversity of alkane degrading bacteria in hydrocarbon contaminated soils
by: Michael eSchloter
Published: (2014-03-01)

Role of the Demethylase AlkB Homolog H5 in the Promotion of Dentinogenesis
by: Cheng Tian, et al.
Published: (2022-06-01)

Structural Insights into Diversity and n-Alkane Biodegradation Mechanisms of Alkane Hydroxylases
by: Yurui eJi, et al.
Published: (2013-03-01)

The bioinformatics and experimental analysis of AlkB family for prognosis and immune cell infiltration in hepatocellular carcinoma
by: Bi Peng, et al.
Published: (2021-09-01)

Cloning and Expression of Pseudomonas aeruginosa AlkB Gene in E. coli
by: Fadhil N. Al-Kanany, et al.
Published: (2020-03-01)

Genome-Wide Identification and Characterization of the <i>AlkB</i> Gene Family in Sweet Orange (<i>Citrus sinensis</i>)
by: Aijun Huang, et al.
Published: (2022-12-01)

Kinetic Studies on the 2-Oxoglutarate/Fe(II)-Dependent Nucleic Acid Modifying Enzymes from the AlkB and TET Families
by: Zhiyuan Peng, et al.
Published: (2023-03-01)

The AlkB Homolog SlALKBH10B Negatively Affects Drought and Salt Tolerance in <i>Solanum lycopersicum</i>
by: Hui Shen, et al.
Published: (2023-12-01)

M. tuberculosis AlkX Encoded by rv3249c Regulates a Conserved Alkane Hydroxylase System That Is Important for Replication in Macrophages and Biofilm Formation
by: Haley Stokas, et al.
Published: (2022-08-01)

Sequence Dependent Repair of 1,<i>N</i><sup>6</sup>-Ethenoadenine by DNA Repair Enzymes ALKBH2, ALKBH3, and AlkB
by: Rui Qi, et al.
Published: (2021-08-01)

Genome-wide identification of the AlkB homologs gene family, PagALKBH9B and PagALKBH10B regulated salt stress response in Populus
by: Ye Zhao, et al.
Published: (2022-09-01)

Diversity of Bacterioplankton and Bacteriobenthos from the Veracruz Reef System, Southwestern Gulf of Mexico
by: Citlali Rodríguez-Gómez, et al.
Published: (2021-03-01)

Newly Isolated Alkane Hydroxylase and Lipase Producing <i>Geobacillus</i> and <i>Anoxybacillus</i> Species Involved in Crude Oil Degradation
by: Durratul Fatini Yusoff, et al.
Published: (2020-08-01)

Identity and mechanisms of alkane-oxidizing metalloenzymes from deep-sea hydrothermal vents
by: Rachel Narehood Austin, et al.
Published: (2013-05-01)

Draft Genome of <i>Nocardia canadensis</i> sp. nov. Isolated from Petroleum-Hydrocarbon-Contaminated Soil
by: Fahad Alotaibi, et al.
Published: (2023-12-01)

Bacterioplankton Community Profiling of the Surface Waters of Kuwait
by: Nasra Ismail, et al.
Published: (2022-04-01)

Characterization and Transcriptional Regulation of <i>n</i>-Alkane Hydroxylase Gene Cluster of <i>Rhodococcus jostii</i> RHA1
by: Namiko Gibu, et al.
Published: (2019-10-01)

Changes in the Bacterioplankton Community Structure from Southern Gulf of Mexico During a Simulated Crude Oil Spill at Mesocosm Scale
by: Sonia S. Valencia-Agami, et al.
Published: (2019-10-01)

Crude Oil Degradation in Temperatures Below the Freezing Point by Bacteria from Hydrocarbon-Contaminated Arctic Soils and the Genome Analysis of <i>Sphingomonas</i> sp. AR_OL41
by: Ekaterina M. Semenova, et al.
Published: (2023-12-01)

Contemporary Methods for Identification of Bacterioplankton Species-Specific Biogeochemical Functions
by: Olesya V. Kolmakova
Published: (2013-03-01)

Impact of the inflow of Vistula river waters on the pelagic zone in the Gulf of Gdańsk
by: Nadezhda Torgunova, et al.
Published: (2013-11-01)

Structure and mechanism of the alkane-oxidizing enzyme AlkB
by: Xue Guo, et al.
Published: (2023-04-01)

Distribution and sources of n-alkanes and polycyclic aromatic hydrocarbons in shellfish of the Egyptian Red Sea coast
by: Ahmed El Nemr, et al.
Published: (2016-06-01)

Role of ALKBH1 in the Core Transcriptional Network of Embryonic Stem Cells
by: Rune Ougland, et al.
Published: (2016-01-01)

DNA Methylation on N6-Adenine Regulates the Hyphal Development during Dimorphism in the Early-Diverging Fungus <i>Mucor lusitanicus</i>
by: Macario Osorio-Concepción, et al.
Published: (2021-09-01)

Characterization of diesel-degrading, hydrolytic enzymes-producing Streptomyces spp. isolated from fuel-oil polluted soils
by: Ismail Saadoun, et al.
Published: (2023-12-01)

A real-time PCR-based quantitative assay for 3-methylcytosine demethylase activity of ALKBH3
by: Yuko Ueda, et al.
Published: (2016-03-01)

Cloning and gene expression of alkane hydroxylase gene from Pseudomonas putida
by: Mahdi Hasanshahian, et al.
Published: (2017-06-01)

Geomicrobiological linkages between short-chain alkane consumption and sulfate reduction rates in seep sediments.
by: Arpita eBose, et al.
Published: (2013-12-01)

Electrochemical Hydroxylation of C3–C12 n-Alkanes by Recombinant Alkane Hydroxylase (AlkB) and Rubredoxin-2 (AlkG) from Pseudomonas putida GPo1
by: Yi-Fang Tsai, et al.
Published: (2017-08-01)

Alkene/alkane permselectivities of a carbon molecular sieve membrane /
by: 303179 Hiroyuki Suda, et al.

ALKBH5 inhibitors as a potential treatment strategy in heart failure—inferences from gene expression profiling
by: Sumra Komal, et al.
Published: (2023-07-01)

MiR-141-3p promotes malignant progression in prostate cancer through AlkB homolog 5-mediated m6A modification of protein arginine methyltransferase 6
by: Xun Li, et al.
Published: (2023-01-01)