Complete mitogenome of Hainan medaka Oryzias curvinotus (Teleostei: Beloniformes) and transcriptional differences between male and female liver
In this study, combining the liver transcripts from both sexes by RNA-Seq with DNA sequences by conventional PCRs, we have determined the complete mitogenome of Hainan medaka Oryzias curvinotus collected from the mangrove seawater of the Leizhou Peninsula in tropical South China (Accession no.: KY36...
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2017-01-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2017.1303340 |
| _version_ | 1797640845184204800 |
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| author | Zhongduo Wang Shuisheng Long Jian Liao Chengqin Huang Hairui Zhang Shunkai Huang Yanping Zhang Li Liu Yusong Guo |
| author_facet | Zhongduo Wang Shuisheng Long Jian Liao Chengqin Huang Hairui Zhang Shunkai Huang Yanping Zhang Li Liu Yusong Guo |
| author_sort | Zhongduo Wang |
| collection | DOAJ |
| description | In this study, combining the liver transcripts from both sexes by RNA-Seq with DNA sequences by conventional PCRs, we have determined the complete mitogenome of Hainan medaka Oryzias curvinotus collected from the mangrove seawater of the Leizhou Peninsula in tropical South China (Accession no.: KY364884). The mitochondrial genome is 16,676 bp, and its content and structure are highly homologous to those of other teleostean fishes, including 13 protein-coding genes (PCGs), 2 rRNAs, 22 tRNA and 1 control region. Among the PCGs, ATG is used as the initiation codon, except for GTG in COI gene. There are 7 overlapping genes with overlap lengths ranging from 1 to 10 nucleotides (nt), while ten intergenic regions with a total of 66 nt and a maximum interval of 37 nt between tRNAAsn and tRNACys. Moreover, the data from RNA-Seq shows that the significant differences exist in the expression patterns of mitogenomes between male and female. |
| first_indexed | 2024-03-11T13:36:56Z |
| format | Article |
| id | doaj.art-0459cc6687b3439f812fe08fdf17fb27 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:36:56Z |
| publishDate | 2017-01-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-0459cc6687b3439f812fe08fdf17fb272023-11-02T15:42:55ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592017-01-012115715810.1080/23802359.2017.13033401303340Complete mitogenome of Hainan medaka Oryzias curvinotus (Teleostei: Beloniformes) and transcriptional differences between male and female liverZhongduo Wang0Shuisheng Long1Jian Liao2Chengqin Huang3Hairui Zhang4Shunkai Huang5Yanping Zhang6Li Liu7Yusong Guo8Fisheries College, Guangdong Ocean UniversityFisheries College, Guangdong Ocean UniversityFisheries College, Guangdong Ocean UniversityFisheries College, Guangdong Ocean UniversityFisheries College, Guangdong Ocean UniversityFisheries College, Guangdong Ocean UniversityFisheries College, Guangdong Ocean UniversityFisheries College, Guangdong Ocean UniversityFisheries College, Guangdong Ocean UniversityIn this study, combining the liver transcripts from both sexes by RNA-Seq with DNA sequences by conventional PCRs, we have determined the complete mitogenome of Hainan medaka Oryzias curvinotus collected from the mangrove seawater of the Leizhou Peninsula in tropical South China (Accession no.: KY364884). The mitochondrial genome is 16,676 bp, and its content and structure are highly homologous to those of other teleostean fishes, including 13 protein-coding genes (PCGs), 2 rRNAs, 22 tRNA and 1 control region. Among the PCGs, ATG is used as the initiation codon, except for GTG in COI gene. There are 7 overlapping genes with overlap lengths ranging from 1 to 10 nucleotides (nt), while ten intergenic regions with a total of 66 nt and a maximum interval of 37 nt between tRNAAsn and tRNACys. Moreover, the data from RNA-Seq shows that the significant differences exist in the expression patterns of mitogenomes between male and female.http://dx.doi.org/10.1080/23802359.2017.1303340oryzias curvinotushainan medakamitogenomerna-seqphylogenetic analysis |
| spellingShingle | Zhongduo Wang Shuisheng Long Jian Liao Chengqin Huang Hairui Zhang Shunkai Huang Yanping Zhang Li Liu Yusong Guo Complete mitogenome of Hainan medaka Oryzias curvinotus (Teleostei: Beloniformes) and transcriptional differences between male and female liver Mitochondrial DNA. Part B. Resources oryzias curvinotus hainan medaka mitogenome rna-seq phylogenetic analysis |
| title | Complete mitogenome of Hainan medaka Oryzias curvinotus (Teleostei: Beloniformes) and transcriptional differences between male and female liver |
| title_full | Complete mitogenome of Hainan medaka Oryzias curvinotus (Teleostei: Beloniformes) and transcriptional differences between male and female liver |
| title_fullStr | Complete mitogenome of Hainan medaka Oryzias curvinotus (Teleostei: Beloniformes) and transcriptional differences between male and female liver |
| title_full_unstemmed | Complete mitogenome of Hainan medaka Oryzias curvinotus (Teleostei: Beloniformes) and transcriptional differences between male and female liver |
| title_short | Complete mitogenome of Hainan medaka Oryzias curvinotus (Teleostei: Beloniformes) and transcriptional differences between male and female liver |
| title_sort | complete mitogenome of hainan medaka oryzias curvinotus teleostei beloniformes and transcriptional differences between male and female liver |
| topic | oryzias curvinotus hainan medaka mitogenome rna-seq phylogenetic analysis |
| url | http://dx.doi.org/10.1080/23802359.2017.1303340 |
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