Complete mitochondrial genome of the European smelt Osmerus eperlanus (Osmeriformes, Osmeridae)
The complete mitochondrial (mt) genome was sequenced in two individuals of the European smelt Osmerus eperlanus. The genome sequences are 16,608 and 16,609 bp in size, and the gene arrangement, composition, and size are very similar to the other smelt mt genomes previously published. The difference...
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2018-07-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2018.1483768 |
| _version_ | 1797640657051844608 |
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| author | Evgeniy S. Balakirev Alexandra Yu Kravchenko Nikolai S. Romanov Francisco J. Ayala |
| author_facet | Evgeniy S. Balakirev Alexandra Yu Kravchenko Nikolai S. Romanov Francisco J. Ayala |
| author_sort | Evgeniy S. Balakirev |
| collection | DOAJ |
| description | The complete mitochondrial (mt) genome was sequenced in two individuals of the European smelt Osmerus eperlanus. The genome sequences are 16,608 and 16,609 bp in size, and the gene arrangement, composition, and size are very similar to the other smelt mt genomes previously published. The difference between the two genomes studied is low, 0.05%. The difference is significantly higher (6.95%) between the O. eperlanus genomes studied here and the genome of the congeneric species, O. mordax (HM106493.1) available in GenBank. The distribution of divergence is non-uniform along the genomes. There is a continuous segment (≈2.5 kb) encompassing tRNA-Phe, complete 12S rRNA gene, tRNA-Val, and partial 16S rRNA gene, which demonstrates significantly lower levels of divergence than on average for the whole genome. The 12S rRNA and 16S rRNA genes are frequently used for phylogenetic and molecular taxonomy analyses and could underestimate the level of divergence between osmerid fishes. |
| first_indexed | 2024-03-11T13:34:59Z |
| format | Article |
| id | doaj.art-046ef10f10654b30bb5995f8a6c5b5d2 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:34:59Z |
| publishDate | 2018-07-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-046ef10f10654b30bb5995f8a6c5b5d22023-11-02T15:57:24ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592018-07-013274474510.1080/23802359.2018.14837681483768Complete mitochondrial genome of the European smelt Osmerus eperlanus (Osmeriformes, Osmeridae)Evgeniy S. Balakirev0Alexandra Yu Kravchenko1Nikolai S. Romanov2Francisco J. Ayala3University of California, IrvineNational Scientific Center of Marine BiologyNational Scientific Center of Marine BiologyUniversity of California, IrvineThe complete mitochondrial (mt) genome was sequenced in two individuals of the European smelt Osmerus eperlanus. The genome sequences are 16,608 and 16,609 bp in size, and the gene arrangement, composition, and size are very similar to the other smelt mt genomes previously published. The difference between the two genomes studied is low, 0.05%. The difference is significantly higher (6.95%) between the O. eperlanus genomes studied here and the genome of the congeneric species, O. mordax (HM106493.1) available in GenBank. The distribution of divergence is non-uniform along the genomes. There is a continuous segment (≈2.5 kb) encompassing tRNA-Phe, complete 12S rRNA gene, tRNA-Val, and partial 16S rRNA gene, which demonstrates significantly lower levels of divergence than on average for the whole genome. The 12S rRNA and 16S rRNA genes are frequently used for phylogenetic and molecular taxonomy analyses and could underestimate the level of divergence between osmerid fishes.http://dx.doi.org/10.1080/23802359.2018.1483768european smelt osmerus eperlanuso. mordaxosmeridaemallotushypomesusosmerusmitochondrial genome |
| spellingShingle | Evgeniy S. Balakirev Alexandra Yu Kravchenko Nikolai S. Romanov Francisco J. Ayala Complete mitochondrial genome of the European smelt Osmerus eperlanus (Osmeriformes, Osmeridae) Mitochondrial DNA. Part B. Resources european smelt osmerus eperlanus o. mordax osmeridae mallotus hypomesus osmerus mitochondrial genome |
| title | Complete mitochondrial genome of the European smelt Osmerus eperlanus (Osmeriformes, Osmeridae) |
| title_full | Complete mitochondrial genome of the European smelt Osmerus eperlanus (Osmeriformes, Osmeridae) |
| title_fullStr | Complete mitochondrial genome of the European smelt Osmerus eperlanus (Osmeriformes, Osmeridae) |
| title_full_unstemmed | Complete mitochondrial genome of the European smelt Osmerus eperlanus (Osmeriformes, Osmeridae) |
| title_short | Complete mitochondrial genome of the European smelt Osmerus eperlanus (Osmeriformes, Osmeridae) |
| title_sort | complete mitochondrial genome of the european smelt osmerus eperlanus osmeriformes osmeridae |
| topic | european smelt osmerus eperlanus o. mordax osmeridae mallotus hypomesus osmerus mitochondrial genome |
| url | http://dx.doi.org/10.1080/23802359.2018.1483768 |
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