Evolutionary history of genus Coptis and its dynamic changes in the potential suitable distribution area
The genus Coptis belongs to the Ranunculaceae family, containing 15 recognized species highly diverse in morphology. It is a conspicuous taxon with special evolutionary position, distribution pattern and medicinal value, which makes it to be of great research and conservation significance. In order...
| Main Authors: | , , , , , , , , , , , |
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| Format: | Article |
| Language: | English |
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Frontiers Media S.A.
2022-11-01
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| Series: | Frontiers in Plant Science |
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| Online Access: | https://www.frontiersin.org/articles/10.3389/fpls.2022.1003368/full |
| _version_ | 1828744562180358144 |
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| author | Yiheng Wang Yiheng Wang Jiahui Sun Ping Qiao Jingyi Wang Mengli Wang Yongxi Du Yongxi Du Feng Xiong Feng Xiong Jun Luo Qingjun Yuan Wenpan Dong Luqi Huang Lanping Guo Lanping Guo |
| author_facet | Yiheng Wang Yiheng Wang Jiahui Sun Ping Qiao Jingyi Wang Mengli Wang Yongxi Du Yongxi Du Feng Xiong Feng Xiong Jun Luo Qingjun Yuan Wenpan Dong Luqi Huang Lanping Guo Lanping Guo |
| author_sort | Yiheng Wang |
| collection | DOAJ |
| description | The genus Coptis belongs to the Ranunculaceae family, containing 15 recognized species highly diverse in morphology. It is a conspicuous taxon with special evolutionary position, distribution pattern and medicinal value, which makes it to be of great research and conservation significance. In order to better understand the evolutionary dynamics of Coptis and promote more practical conservation measures, we performed plastome sequencing and used the sequencing data in combination with worldwide occurrence data of Coptis to estimate genetic diversity and divergence times, rebuild biogeographic history and predict its potential suitable distribution area. The average nucleotide diversity of Coptis was 0.0067 and the hotspot regions with the highest hypermutation levels were located in the ycf1 gene. Coptis is most likely to have originated in North America and Japanese archipelago and has a typical Eastern Asian and North American disjunct distribution pattern, while the species diversity center is located in Mid-West China and Japan. The crown age of the genus is estimated at around 8.49 Mya. The most suitable climatic conditions for Coptis were as follows: precipitation of driest quarter > 25.5 mm, annual precipitation > 844.9 mm and annual mean temperature -3.1 to 19 °C. The global and China suitable area shows an upward trend in the future when emission of greenhouse gases is well controlled, but the area, especially in China, decreases significantly without greenhouse gas policy interventions. The results of this study provide a comprehensive insight into the Coptis evolutionary dynamics and will facilitate future conservation efforts. |
| first_indexed | 2024-04-13T12:01:09Z |
| format | Article |
| id | doaj.art-049cae40bf434ad6bd13ed2be5517861 |
| institution | Directory Open Access Journal |
| issn | 1664-462X |
| language | English |
| last_indexed | 2024-04-13T12:01:09Z |
| publishDate | 2022-11-01 |
| publisher | Frontiers Media S.A. |
| record_format | Article |
| series | Frontiers in Plant Science |
| spelling | doaj.art-049cae40bf434ad6bd13ed2be55178612022-12-22T02:47:46ZengFrontiers Media S.A.Frontiers in Plant Science1664-462X2022-11-011310.3389/fpls.2022.10033681003368Evolutionary history of genus Coptis and its dynamic changes in the potential suitable distribution areaYiheng Wang0Yiheng Wang1Jiahui Sun2Ping Qiao3Jingyi Wang4Mengli Wang5Yongxi Du6Yongxi Du7Feng Xiong8Feng Xiong9Jun Luo10Qingjun Yuan11Wenpan Dong12Luqi Huang13Lanping Guo14Lanping Guo15State Key Laboratory Breeding Base of Dao-di Herbs, National Resource Center for Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijing, ChinaKey Laboratory of Biology and Cultivation of Herb Medicine, Ministry of Agriculture and Rural Affairs, Beijing, ChinaState Key Laboratory Breeding Base of Dao-di Herbs, National Resource Center for Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijing, ChinaState Key Laboratory Breeding Base of Dao-di Herbs, National Resource Center for Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijing, ChinaState Key Laboratory Breeding Base of Dao-di Herbs, National Resource Center for Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijing, ChinaState Key Laboratory Breeding Base of Dao-di Herbs, National Resource Center for Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijing, ChinaState Key Laboratory Breeding Base of Dao-di Herbs, National Resource Center for Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijing, ChinaKey Laboratory of Biology and Cultivation of Herb Medicine, Ministry of Agriculture and Rural Affairs, Beijing, ChinaState Key Laboratory Breeding Base of Dao-di Herbs, National Resource Center for Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijing, ChinaKey Laboratory of Biology and Cultivation of Herb Medicine, Ministry of Agriculture and Rural Affairs, Beijing, ChinaKunming Xishan Forestry and Grassland Comprehensive Service Center, Kunming, ChinaState Key Laboratory Breeding Base of Dao-di Herbs, National Resource Center for Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijing, ChinaLaboratory of Systematic Evolution and Biogeography of Woody Plants, School of Ecology and Nature Conservation, Beijing Forestry University, Beijing, ChinaState Key Laboratory Breeding Base of Dao-di Herbs, National Resource Center for Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijing, ChinaState Key Laboratory Breeding Base of Dao-di Herbs, National Resource Center for Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijing, ChinaKey Laboratory of Biology and Cultivation of Herb Medicine, Ministry of Agriculture and Rural Affairs, Beijing, ChinaThe genus Coptis belongs to the Ranunculaceae family, containing 15 recognized species highly diverse in morphology. It is a conspicuous taxon with special evolutionary position, distribution pattern and medicinal value, which makes it to be of great research and conservation significance. In order to better understand the evolutionary dynamics of Coptis and promote more practical conservation measures, we performed plastome sequencing and used the sequencing data in combination with worldwide occurrence data of Coptis to estimate genetic diversity and divergence times, rebuild biogeographic history and predict its potential suitable distribution area. The average nucleotide diversity of Coptis was 0.0067 and the hotspot regions with the highest hypermutation levels were located in the ycf1 gene. Coptis is most likely to have originated in North America and Japanese archipelago and has a typical Eastern Asian and North American disjunct distribution pattern, while the species diversity center is located in Mid-West China and Japan. The crown age of the genus is estimated at around 8.49 Mya. The most suitable climatic conditions for Coptis were as follows: precipitation of driest quarter > 25.5 mm, annual precipitation > 844.9 mm and annual mean temperature -3.1 to 19 °C. The global and China suitable area shows an upward trend in the future when emission of greenhouse gases is well controlled, but the area, especially in China, decreases significantly without greenhouse gas policy interventions. The results of this study provide a comprehensive insight into the Coptis evolutionary dynamics and will facilitate future conservation efforts.https://www.frontiersin.org/articles/10.3389/fpls.2022.1003368/fullCoptisplastid genetic diversitydivergence timebiogeographic historypotential suitable distributionphylogenetic relationship |
| spellingShingle | Yiheng Wang Yiheng Wang Jiahui Sun Ping Qiao Jingyi Wang Mengli Wang Yongxi Du Yongxi Du Feng Xiong Feng Xiong Jun Luo Qingjun Yuan Wenpan Dong Luqi Huang Lanping Guo Lanping Guo Evolutionary history of genus Coptis and its dynamic changes in the potential suitable distribution area Frontiers in Plant Science Coptis plastid genetic diversity divergence time biogeographic history potential suitable distribution phylogenetic relationship |
| title | Evolutionary history of genus Coptis and its dynamic changes in the potential suitable distribution area |
| title_full | Evolutionary history of genus Coptis and its dynamic changes in the potential suitable distribution area |
| title_fullStr | Evolutionary history of genus Coptis and its dynamic changes in the potential suitable distribution area |
| title_full_unstemmed | Evolutionary history of genus Coptis and its dynamic changes in the potential suitable distribution area |
| title_short | Evolutionary history of genus Coptis and its dynamic changes in the potential suitable distribution area |
| title_sort | evolutionary history of genus coptis and its dynamic changes in the potential suitable distribution area |
| topic | Coptis plastid genetic diversity divergence time biogeographic history potential suitable distribution phylogenetic relationship |
| url | https://www.frontiersin.org/articles/10.3389/fpls.2022.1003368/full |
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