Complete chloroplast genome of the wild Japanese Mountain cherry (Prunus jamasakura, Rosaceae)
Prunus jamasakura is a species of Prunus native to eastern Asia. We determined the first complete chloroplast genome of Prunus jamasakura using genome skimming approach. The cp genome was 157,905 bp long, with a large single-copy region (LSC) of 85,910 bp and a small single-copy region (SSC) of 19,1...
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2020-01-01
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| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2019.1699463 |
| _version_ | 1797639466517528576 |
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| author | Xian-Gui Yi Jie Chen Meng Li Hong Zhu Zhong-Shuai Sun Toshio Katsuki Xian-Rong Wang |
| author_facet | Xian-Gui Yi Jie Chen Meng Li Hong Zhu Zhong-Shuai Sun Toshio Katsuki Xian-Rong Wang |
| author_sort | Xian-Gui Yi |
| collection | DOAJ |
| description | Prunus jamasakura is a species of Prunus native to eastern Asia. We determined the first complete chloroplast genome of Prunus jamasakura using genome skimming approach. The cp genome was 157,905 bp long, with a large single-copy region (LSC) of 85,910 bp and a small single-copy region (SSC) of 19,123 bp separated by a pair of inverted repeats (IRs) of 26,436 bp. It encodes 129 genes, including 84 protein-coding genes, 37 tRNA genes, and 8 ribosomal RNA genes. We also reconstructed the phylogeny of Prunus sensu lato using maximum likelihood (ML) method, including our data and previously reported cp genomes of related taxa. The phylogenetic analysis indicated that P. jamasakura is closely related with Prunus speciosa. |
| first_indexed | 2024-03-11T13:18:10Z |
| format | Article |
| id | doaj.art-049f1dc723684922b2aa20cac1eb4b7f |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:18:10Z |
| publishDate | 2020-01-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-049f1dc723684922b2aa20cac1eb4b7f2023-11-03T11:00:18ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592020-01-015129029110.1080/23802359.2019.16994631699463Complete chloroplast genome of the wild Japanese Mountain cherry (Prunus jamasakura, Rosaceae)Xian-Gui Yi0Jie Chen1Meng Li2Hong Zhu3Zhong-Shuai Sun4Toshio Katsuki5Xian-Rong Wang6Co-Innovation Center for the Sustainable Forestry in Southern China; Cerasus Research Center; College of Biology and the Environment, Nanjing Forestry UniversityCo-Innovation Center for the Sustainable Forestry in Southern China; Cerasus Research Center; College of Biology and the Environment, Nanjing Forestry UniversityCo-Innovation Center for the Sustainable Forestry in Southern China; Cerasus Research Center; College of Biology and the Environment, Nanjing Forestry UniversityCo-Innovation Center for the Sustainable Forestry in Southern China; Cerasus Research Center; College of Biology and the Environment, Nanjing Forestry UniversityZhejiang Provincial Key Laboratory of Plant Evolutionary Ecology and Conservation, Taizhou UniversityTama Forest Science Garden, Forestry and Forest Products Research InstituteCo-Innovation Center for the Sustainable Forestry in Southern China; Cerasus Research Center; College of Biology and the Environment, Nanjing Forestry UniversityPrunus jamasakura is a species of Prunus native to eastern Asia. We determined the first complete chloroplast genome of Prunus jamasakura using genome skimming approach. The cp genome was 157,905 bp long, with a large single-copy region (LSC) of 85,910 bp and a small single-copy region (SSC) of 19,123 bp separated by a pair of inverted repeats (IRs) of 26,436 bp. It encodes 129 genes, including 84 protein-coding genes, 37 tRNA genes, and 8 ribosomal RNA genes. We also reconstructed the phylogeny of Prunus sensu lato using maximum likelihood (ML) method, including our data and previously reported cp genomes of related taxa. The phylogenetic analysis indicated that P. jamasakura is closely related with Prunus speciosa.http://dx.doi.org/10.1080/23802359.2019.1699463prunus jamasakuraprunus sensu latochloroplast genomephylogenomics |
| spellingShingle | Xian-Gui Yi Jie Chen Meng Li Hong Zhu Zhong-Shuai Sun Toshio Katsuki Xian-Rong Wang Complete chloroplast genome of the wild Japanese Mountain cherry (Prunus jamasakura, Rosaceae) Mitochondrial DNA. Part B. Resources prunus jamasakura prunus sensu lato chloroplast genome phylogenomics |
| title | Complete chloroplast genome of the wild Japanese Mountain cherry (Prunus jamasakura, Rosaceae) |
| title_full | Complete chloroplast genome of the wild Japanese Mountain cherry (Prunus jamasakura, Rosaceae) |
| title_fullStr | Complete chloroplast genome of the wild Japanese Mountain cherry (Prunus jamasakura, Rosaceae) |
| title_full_unstemmed | Complete chloroplast genome of the wild Japanese Mountain cherry (Prunus jamasakura, Rosaceae) |
| title_short | Complete chloroplast genome of the wild Japanese Mountain cherry (Prunus jamasakura, Rosaceae) |
| title_sort | complete chloroplast genome of the wild japanese mountain cherry prunus jamasakura rosaceae |
| topic | prunus jamasakura prunus sensu lato chloroplast genome phylogenomics |
| url | http://dx.doi.org/10.1080/23802359.2019.1699463 |
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