De novo assembling a complete mitochondrial genome of Pedicularis rex (Orobanchaceae) using GetOrganelle toolkit
We reported the first mitogenome of Pedicularis from P. rex (Orobanchaceae), which is endemic to SW China. The complete mitochondrial genome (mitogenome or chondriome) was a single circular chromosome that was 219,859 bp in length. It contains 56 genes, including 34 protein-coding (cox2 and atp9 wit...
| Main Authors: | , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2020-01-01
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| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2020.1722038 |
| _version_ | 1797639395103211520 |
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| author | Xin Li Chun-Yan Lin Jun-Bo Yang Wen-Bin Yu |
| author_facet | Xin Li Chun-Yan Lin Jun-Bo Yang Wen-Bin Yu |
| author_sort | Xin Li |
| collection | DOAJ |
| description | We reported the first mitogenome of Pedicularis from P. rex (Orobanchaceae), which is endemic to SW China. The complete mitochondrial genome (mitogenome or chondriome) was a single circular chromosome that was 219,859 bp in length. It contains 56 genes, including 34 protein-coding (cox2 and atp9 with two copies), 19 transfer RNA (tRNA), and three ribosomal RNA (rRNA) genes. Phylogenetic analysis showed that Pedicularis rex was closely related to Castilleja paramensis. |
| first_indexed | 2024-03-11T13:16:14Z |
| format | Article |
| id | doaj.art-050c0baaf1c842a2a8d1c2d691b5e958 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:16:14Z |
| publishDate | 2020-01-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-050c0baaf1c842a2a8d1c2d691b5e9582023-11-03T11:00:23ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592020-01-01511056105710.1080/23802359.2020.17220381722038De novo assembling a complete mitochondrial genome of Pedicularis rex (Orobanchaceae) using GetOrganelle toolkitXin Li0Chun-Yan Lin1Jun-Bo Yang2Wen-Bin Yu3Center for Integrative Conservation, Xishuangbanna Tropical Botanical Garden, Chinese Academy of SciencesPlant Germplasm and Genomics Center, Germplasm Bank of Wild Species, Kunming Institute of Botany, Chinese Academy of SciencesPlant Germplasm and Genomics Center, Germplasm Bank of Wild Species, Kunming Institute of Botany, Chinese Academy of SciencesCenter for Integrative Conservation, Xishuangbanna Tropical Botanical Garden, Chinese Academy of SciencesWe reported the first mitogenome of Pedicularis from P. rex (Orobanchaceae), which is endemic to SW China. The complete mitochondrial genome (mitogenome or chondriome) was a single circular chromosome that was 219,859 bp in length. It contains 56 genes, including 34 protein-coding (cox2 and atp9 with two copies), 19 transfer RNA (tRNA), and three ribosomal RNA (rRNA) genes. Phylogenetic analysis showed that Pedicularis rex was closely related to Castilleja paramensis.http://dx.doi.org/10.1080/23802359.2020.1722038hemiparasitic plantmitogenomepediculariswhole genome sequencing data |
| spellingShingle | Xin Li Chun-Yan Lin Jun-Bo Yang Wen-Bin Yu De novo assembling a complete mitochondrial genome of Pedicularis rex (Orobanchaceae) using GetOrganelle toolkit Mitochondrial DNA. Part B. Resources hemiparasitic plant mitogenome pedicularis whole genome sequencing data |
| title | De novo assembling a complete mitochondrial genome of Pedicularis rex (Orobanchaceae) using GetOrganelle toolkit |
| title_full | De novo assembling a complete mitochondrial genome of Pedicularis rex (Orobanchaceae) using GetOrganelle toolkit |
| title_fullStr | De novo assembling a complete mitochondrial genome of Pedicularis rex (Orobanchaceae) using GetOrganelle toolkit |
| title_full_unstemmed | De novo assembling a complete mitochondrial genome of Pedicularis rex (Orobanchaceae) using GetOrganelle toolkit |
| title_short | De novo assembling a complete mitochondrial genome of Pedicularis rex (Orobanchaceae) using GetOrganelle toolkit |
| title_sort | de novo assembling a complete mitochondrial genome of pedicularis rex orobanchaceae using getorganelle toolkit |
| topic | hemiparasitic plant mitogenome pedicularis whole genome sequencing data |
| url | http://dx.doi.org/10.1080/23802359.2020.1722038 |
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