Comparative Study of Nei�s D with other Genetic Distance Measures between Barak Valley Muslims and other Nations for ABO Locus
Quantification of the genetic distance between populations is essential in many genetic research programs. Several formulae were proposed for the estimation of genetic distance between populations using gene frequency data. But the selection of a suitable measure for estimating genetic distance betw...
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| Format: | Article |
| Language: | English |
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Society of Land Measurements and Cadastre from Transylvania (SMTCT)
2012-02-01
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| Series: | Notulae Scientia Biologicae |
| Online Access: | http://www.notulaebiologicae.ro/index.php/nsb/article/view/6644 |
| _version_ | 1818499707652014080 |
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| author | Supriyo CHAKRABORTY Saumendra Kumar BHATTACHARJEE Gauri Datta SHARMA |
| author_facet | Supriyo CHAKRABORTY Saumendra Kumar BHATTACHARJEE Gauri Datta SHARMA |
| author_sort | Supriyo CHAKRABORTY |
| collection | DOAJ |
| description | Quantification of the genetic distance between populations is essential in many genetic research programs. Several formulae were proposed for the estimation of genetic distance between populations using gene frequency data. But the selection of a suitable measure for estimating genetic distance between real-world human populations is a very difficult task despite the widely used measure Neis D. The present study was undertaken to estimate the genetic distance between Barak Valley Muslims (BVM) and other twenty-four nations using seven different measures with ABO blood group gene frequency data for comparative analysis and to estimate the correlation coefficients between distance measures and to work out the linear regression equations. Seven genetic distance measures namely Neis D, Neis Nm, La, Neis Da, Dc, Re and Neis Ne were estimated between BVM and other 24 nations enroute the journey of mankind from Africa that commenced about 200,000 years ago (www.bradshawfoundation.com). Correlation coefficients between Neis D with other measures were estimated to find out which other genetic distance measures were closely related to Neis D. Neis D showed highly significant (p=0.01) positive correlation with Cavalli-Sforza and Edwards chord distance Dc (0.90), Reynolds Re (0.90), Neis Da (0.74) and Neis Ne (0.63) but negative correlation with Neis Nm and La. Linear regression equations of Neis D with other distance measures were estimated as Da = -0.80 + 1.34D, Dc = 1.91 + 4.44D, Re = -0.51 + 0.24D and Ne = -7.60 + 1.30D. |
| first_indexed | 2024-12-10T20:33:06Z |
| format | Article |
| id | doaj.art-05de426fb5ee4f5b97dd096f57b46d7e |
| institution | Directory Open Access Journal |
| issn | 2067-3205 2067-3264 |
| language | English |
| last_indexed | 2024-12-10T20:33:06Z |
| publishDate | 2012-02-01 |
| publisher | Society of Land Measurements and Cadastre from Transylvania (SMTCT) |
| record_format | Article |
| series | Notulae Scientia Biologicae |
| spelling | doaj.art-05de426fb5ee4f5b97dd096f57b46d7e2022-12-22T01:34:37ZengSociety of Land Measurements and Cadastre from Transylvania (SMTCT)Notulae Scientia Biologicae2067-32052067-32642012-02-0141121710.15835/nsb4166446908Comparative Study of Nei�s D with other Genetic Distance Measures between Barak Valley Muslims and other Nations for ABO LocusSupriyo CHAKRABORTY0Saumendra Kumar BHATTACHARJEE1Gauri Datta SHARMA21Assam University, Department of Biotechnology, Silchar 788011, AssamSilchar Medical College and Hospital, Department of Pathology, Silchar 788014, AssamAssam University, Department of Life Science and Bioinformatics, Silchar 788011, AssamQuantification of the genetic distance between populations is essential in many genetic research programs. Several formulae were proposed for the estimation of genetic distance between populations using gene frequency data. But the selection of a suitable measure for estimating genetic distance between real-world human populations is a very difficult task despite the widely used measure Neis D. The present study was undertaken to estimate the genetic distance between Barak Valley Muslims (BVM) and other twenty-four nations using seven different measures with ABO blood group gene frequency data for comparative analysis and to estimate the correlation coefficients between distance measures and to work out the linear regression equations. Seven genetic distance measures namely Neis D, Neis Nm, La, Neis Da, Dc, Re and Neis Ne were estimated between BVM and other 24 nations enroute the journey of mankind from Africa that commenced about 200,000 years ago (www.bradshawfoundation.com). Correlation coefficients between Neis D with other measures were estimated to find out which other genetic distance measures were closely related to Neis D. Neis D showed highly significant (p=0.01) positive correlation with Cavalli-Sforza and Edwards chord distance Dc (0.90), Reynolds Re (0.90), Neis Da (0.74) and Neis Ne (0.63) but negative correlation with Neis Nm and La. Linear regression equations of Neis D with other distance measures were estimated as Da = -0.80 + 1.34D, Dc = 1.91 + 4.44D, Re = -0.51 + 0.24D and Ne = -7.60 + 1.30D.http://www.notulaebiologicae.ro/index.php/nsb/article/view/6644 |
| spellingShingle | Supriyo CHAKRABORTY Saumendra Kumar BHATTACHARJEE Gauri Datta SHARMA Comparative Study of Nei�s D with other Genetic Distance Measures between Barak Valley Muslims and other Nations for ABO Locus Notulae Scientia Biologicae |
| title | Comparative Study of Nei�s D with other Genetic Distance Measures between Barak Valley Muslims and other Nations for ABO Locus |
| title_full | Comparative Study of Nei�s D with other Genetic Distance Measures between Barak Valley Muslims and other Nations for ABO Locus |
| title_fullStr | Comparative Study of Nei�s D with other Genetic Distance Measures between Barak Valley Muslims and other Nations for ABO Locus |
| title_full_unstemmed | Comparative Study of Nei�s D with other Genetic Distance Measures between Barak Valley Muslims and other Nations for ABO Locus |
| title_short | Comparative Study of Nei�s D with other Genetic Distance Measures between Barak Valley Muslims and other Nations for ABO Locus |
| title_sort | comparative study of nei�s d with other genetic distance measures between barak valley muslims and other nations for abo locus |
| url | http://www.notulaebiologicae.ro/index.php/nsb/article/view/6644 |
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