The complete chloroplast genome of Gynura japonica and its phylogenetic implications
Gynura japonica (Asteraceae) is a folk herbal medicine with multi-pharmacological functions involving analgesic, hemostatic and antiangiogenic activities. The study was conducted to assemble the complete chloroplast (cp) genome of G. japonica through a genome-skimming approach. The assembled cp geno...
| Main Authors: | , , , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2022-07-01
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| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2022.2102443 |
| _version_ | 1797638546861850624 |
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| author | Mimi Li Xin Xian Bingru Ren Hongjiang Wang Weilin Li Jian Chen |
| author_facet | Mimi Li Xin Xian Bingru Ren Hongjiang Wang Weilin Li Jian Chen |
| author_sort | Mimi Li |
| collection | DOAJ |
| description | Gynura japonica (Asteraceae) is a folk herbal medicine with multi-pharmacological functions involving analgesic, hemostatic and antiangiogenic activities. The study was conducted to assemble the complete chloroplast (cp) genome of G. japonica through a genome-skimming approach. The assembled cp genome was 151,023 bp in size, with 62.8% AT content, consisting of a large single copy (LSC) of 83,185 bp, two copies of inverted repeat (IRa and IRb) of 24,847 bp, and a small single copy (SSC) of 18,144 bp. The cp genome of G. japonica contained 133 genes, including eight ribosomal RNA genes (rRNAs), 37 transfer RNA genes (tRNAs), 86 protein-coding genes (PCGs), and two pseudogenes (ψycf1 and ψrps19). Our phylogenomic analysis based on whole plastid genomes strongly supports G. japonica is a sister to the clade including Crassocephalum crepidioides and Jacobaea vulgaris. |
| first_indexed | 2024-03-11T13:05:11Z |
| format | Article |
| id | doaj.art-069d0325bc5a41f79a346551ad6a64ab |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:05:11Z |
| publishDate | 2022-07-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-069d0325bc5a41f79a346551ad6a64ab2023-11-03T14:44:03ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592022-07-01771392139410.1080/23802359.2022.21024432102443The complete chloroplast genome of Gynura japonica and its phylogenetic implicationsMimi Li0Xin Xian1Bingru Ren2Hongjiang Wang3Weilin Li4Jian Chen5Institute of Botany, Jiangsu Province and Chinese Academy of SciencesInstitute of Botany, Jiangsu Province and Chinese Academy of SciencesInstitute of Botany, Jiangsu Province and Chinese Academy of SciencesInstitute of Botany, Jiangsu Province and Chinese Academy of SciencesInstitute of Botany, Jiangsu Province and Chinese Academy of SciencesInstitute of Botany, Jiangsu Province and Chinese Academy of SciencesGynura japonica (Asteraceae) is a folk herbal medicine with multi-pharmacological functions involving analgesic, hemostatic and antiangiogenic activities. The study was conducted to assemble the complete chloroplast (cp) genome of G. japonica through a genome-skimming approach. The assembled cp genome was 151,023 bp in size, with 62.8% AT content, consisting of a large single copy (LSC) of 83,185 bp, two copies of inverted repeat (IRa and IRb) of 24,847 bp, and a small single copy (SSC) of 18,144 bp. The cp genome of G. japonica contained 133 genes, including eight ribosomal RNA genes (rRNAs), 37 transfer RNA genes (tRNAs), 86 protein-coding genes (PCGs), and two pseudogenes (ψycf1 and ψrps19). Our phylogenomic analysis based on whole plastid genomes strongly supports G. japonica is a sister to the clade including Crassocephalum crepidioides and Jacobaea vulgaris.http://dx.doi.org/10.1080/23802359.2022.2102443asteraceaechloroplast genomegynura japonicasenecoineae |
| spellingShingle | Mimi Li Xin Xian Bingru Ren Hongjiang Wang Weilin Li Jian Chen The complete chloroplast genome of Gynura japonica and its phylogenetic implications Mitochondrial DNA. Part B. Resources asteraceae chloroplast genome gynura japonica senecoineae |
| title | The complete chloroplast genome of Gynura japonica and its phylogenetic implications |
| title_full | The complete chloroplast genome of Gynura japonica and its phylogenetic implications |
| title_fullStr | The complete chloroplast genome of Gynura japonica and its phylogenetic implications |
| title_full_unstemmed | The complete chloroplast genome of Gynura japonica and its phylogenetic implications |
| title_short | The complete chloroplast genome of Gynura japonica and its phylogenetic implications |
| title_sort | complete chloroplast genome of gynura japonica and its phylogenetic implications |
| topic | asteraceae chloroplast genome gynura japonica senecoineae |
| url | http://dx.doi.org/10.1080/23802359.2022.2102443 |
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