Leveraging Very-High Spatial Resolution Hyperspectral and Thermal UAV Imageries for Characterizing Diurnal Indicators of Grapevine Physiology
Efficient and accurate methods to monitor crop physiological responses help growers better understand crop physiology and improve crop productivity. In recent years, developments in unmanned aerial vehicles (UAV) and sensor technology have enabled image acquisition at very-high spectral, spatial, an...
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MDPI AG
2020-10-01
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| Series: | Remote Sensing |
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| Online Access: | https://www.mdpi.com/2072-4292/12/19/3216 |
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| author | Matthew Maimaitiyiming Vasit Sagan Paheding Sidike Maitiniyazi Maimaitijiang Allison J. Miller Misha Kwasniewski |
| author_facet | Matthew Maimaitiyiming Vasit Sagan Paheding Sidike Maitiniyazi Maimaitijiang Allison J. Miller Misha Kwasniewski |
| author_sort | Matthew Maimaitiyiming |
| collection | DOAJ |
| description | Efficient and accurate methods to monitor crop physiological responses help growers better understand crop physiology and improve crop productivity. In recent years, developments in unmanned aerial vehicles (UAV) and sensor technology have enabled image acquisition at very-high spectral, spatial, and temporal resolutions. However, potential applications and limitations of very-high-resolution (VHR) hyperspectral and thermal UAV imaging for characterization of plant diurnal physiology remain largely unknown, due to issues related to shadow and canopy heterogeneity. In this study, we propose a canopy zone-weighting (CZW) method to leverage the potential of VHR (≤9 cm) hyperspectral and thermal UAV imageries in estimating physiological indicators, such as stomatal conductance (G<sub>s</sub>) and steady-state fluorescence (F<sub>s</sub>). Diurnal flights and concurrent in-situ measurements were conducted during grapevine growing seasons in 2017 and 2018 in a vineyard in Missouri, USA. We used neural net classifier and the Canny edge detection method to extract pure vine canopy from the hyperspectral and thermal images, respectively. Then, the vine canopy was segmented into three canopy zones (sunlit, nadir, and shaded) using K-means clustering based on the canopy shadow fraction and canopy temperature. Common reflectance-based spectral indices, sun-induced chlorophyll fluorescence (SIF), and simplified canopy water stress index (siCWSI) were computed as image retrievals. Using the coefficient of determination (R<sup>2</sup>) established between the image retrievals from three canopy zones and the in-situ measurements as a weight factor, weighted image retrievals were calculated and their correlation with in-situ measurements was explored. The results showed that the most frequent and the highest correlations were found for G<sub>s</sub> and F<sub>s</sub>, with CZW-based Photochemical reflectance index (PRI), SIF, and siCWSI (PRI<sub>CZW</sub>, SIF<sub>CZW</sub>, and siCWSI<sub>CZW</sub>), respectively. When all flights combined for the given field campaign date, PRI<sub>CZW</sub>, SIF<sub>CZW</sub>, and siCWSI<sub>CZW</sub> significantly improved the relationship with G<sub>s</sub> and F<sub>s</sub>. The proposed approach takes full advantage of VHR hyperspectral and thermal UAV imageries, and suggests that the CZW method is simple yet effective in estimating G<sub>s</sub> and F<sub>s</sub>. |
| first_indexed | 2024-03-10T15:52:22Z |
| format | Article |
| id | doaj.art-06c29d13d5c8485a91f70df7bb7e5b83 |
| institution | Directory Open Access Journal |
| issn | 2072-4292 |
| language | English |
| last_indexed | 2024-03-10T15:52:22Z |
| publishDate | 2020-10-01 |
| publisher | MDPI AG |
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| series | Remote Sensing |
| spelling | doaj.art-06c29d13d5c8485a91f70df7bb7e5b832023-11-20T15:53:28ZengMDPI AGRemote Sensing2072-42922020-10-011219321610.3390/rs12193216Leveraging Very-High Spatial Resolution Hyperspectral and Thermal UAV Imageries for Characterizing Diurnal Indicators of Grapevine PhysiologyMatthew Maimaitiyiming0Vasit Sagan1Paheding Sidike2Maitiniyazi Maimaitijiang3Allison J. Miller4Misha Kwasniewski5Department of Food Science, University of Missouri, Columbia, MO 65211, USADepartment of Earth and Atmospheric Sciences, Saint Louis University, St. Louis, MO 63108, USADepartment of Applied Computing, Michigan Technological University, Houghton, MI 49931, USADepartment of Earth and Atmospheric Sciences, Saint Louis University, St. Louis, MO 63108, USADepartment of Biology, Saint Louis University, St. Louis, MO 63103, USADepartment of Food Science, University of Missouri, Columbia, MO 65211, USAEfficient and accurate methods to monitor crop physiological responses help growers better understand crop physiology and improve crop productivity. In recent years, developments in unmanned aerial vehicles (UAV) and sensor technology have enabled image acquisition at very-high spectral, spatial, and temporal resolutions. However, potential applications and limitations of very-high-resolution (VHR) hyperspectral and thermal UAV imaging for characterization of plant diurnal physiology remain largely unknown, due to issues related to shadow and canopy heterogeneity. In this study, we propose a canopy zone-weighting (CZW) method to leverage the potential of VHR (≤9 cm) hyperspectral and thermal UAV imageries in estimating physiological indicators, such as stomatal conductance (G<sub>s</sub>) and steady-state fluorescence (F<sub>s</sub>). Diurnal flights and concurrent in-situ measurements were conducted during grapevine growing seasons in 2017 and 2018 in a vineyard in Missouri, USA. We used neural net classifier and the Canny edge detection method to extract pure vine canopy from the hyperspectral and thermal images, respectively. Then, the vine canopy was segmented into three canopy zones (sunlit, nadir, and shaded) using K-means clustering based on the canopy shadow fraction and canopy temperature. Common reflectance-based spectral indices, sun-induced chlorophyll fluorescence (SIF), and simplified canopy water stress index (siCWSI) were computed as image retrievals. Using the coefficient of determination (R<sup>2</sup>) established between the image retrievals from three canopy zones and the in-situ measurements as a weight factor, weighted image retrievals were calculated and their correlation with in-situ measurements was explored. The results showed that the most frequent and the highest correlations were found for G<sub>s</sub> and F<sub>s</sub>, with CZW-based Photochemical reflectance index (PRI), SIF, and siCWSI (PRI<sub>CZW</sub>, SIF<sub>CZW</sub>, and siCWSI<sub>CZW</sub>), respectively. When all flights combined for the given field campaign date, PRI<sub>CZW</sub>, SIF<sub>CZW</sub>, and siCWSI<sub>CZW</sub> significantly improved the relationship with G<sub>s</sub> and F<sub>s</sub>. The proposed approach takes full advantage of VHR hyperspectral and thermal UAV imageries, and suggests that the CZW method is simple yet effective in estimating G<sub>s</sub> and F<sub>s</sub>.https://www.mdpi.com/2072-4292/12/19/3216remote sensingPRISIFCWSIstomatal conductancefluorescence |
| spellingShingle | Matthew Maimaitiyiming Vasit Sagan Paheding Sidike Maitiniyazi Maimaitijiang Allison J. Miller Misha Kwasniewski Leveraging Very-High Spatial Resolution Hyperspectral and Thermal UAV Imageries for Characterizing Diurnal Indicators of Grapevine Physiology Remote Sensing remote sensing PRI SIF CWSI stomatal conductance fluorescence |
| title | Leveraging Very-High Spatial Resolution Hyperspectral and Thermal UAV Imageries for Characterizing Diurnal Indicators of Grapevine Physiology |
| title_full | Leveraging Very-High Spatial Resolution Hyperspectral and Thermal UAV Imageries for Characterizing Diurnal Indicators of Grapevine Physiology |
| title_fullStr | Leveraging Very-High Spatial Resolution Hyperspectral and Thermal UAV Imageries for Characterizing Diurnal Indicators of Grapevine Physiology |
| title_full_unstemmed | Leveraging Very-High Spatial Resolution Hyperspectral and Thermal UAV Imageries for Characterizing Diurnal Indicators of Grapevine Physiology |
| title_short | Leveraging Very-High Spatial Resolution Hyperspectral and Thermal UAV Imageries for Characterizing Diurnal Indicators of Grapevine Physiology |
| title_sort | leveraging very high spatial resolution hyperspectral and thermal uav imageries for characterizing diurnal indicators of grapevine physiology |
| topic | remote sensing PRI SIF CWSI stomatal conductance fluorescence |
| url | https://www.mdpi.com/2072-4292/12/19/3216 |
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