Assessment of Psyllid Handling and DNA Extraction Methods in the Detection of ‘<i>Candidatus</i> Liberibacter Solanacearum’ by qPCR

‘<i>Candidatus</i> Liberibacter solanacearum’ (CaLsol) is an uncultured bacterium, transmitted by psyllids and associated with several diseases in <i>Solanaceae</i> and <i>Apiaceae</i> crops. CaLsol detection in psyllids often requires insect destruction, preventi...

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Bibliographic Details
Main Authors: María Quintana, Leandro de-León, Jaime Cubero, Felipe Siverio
Format: Article
Language:English
Published: MDPI AG 2022-05-01
Series:Microorganisms
Subjects:
Online Access:https://www.mdpi.com/2076-2607/10/6/1104
Description
Summary:‘<i>Candidatus</i> Liberibacter solanacearum’ (CaLsol) is an uncultured bacterium, transmitted by psyllids and associated with several diseases in <i>Solanaceae</i> and <i>Apiaceae</i> crops. CaLsol detection in psyllids often requires insect destruction, preventing a subsequent morphological identification. In this work, we have assessed the influence on the detection of CaLsol by PCR in <i>Bactericera trigonica</i> (Hemiptera: Psyllidae), of four specimen preparations (entire body, ground, cut-off head, and punctured abdomen) and seven DNA extraction methods (PBS suspension, squashing on membrane, CTAB, Chelex, TRIsure<sup>TM</sup>, HotSHOT, and DNeasy<sup>®</sup>). DNA yield and purity ratios, time consumption, cost, and residues generated were also evaluated. Optimum results were obtained through grinding, but it is suggested that destructive procedures are not essential in order to detect CaLsol. Although CaLsol was detected by qPCR with DNA obtained by the different procedures, HotSHOT was the most sensitive method. In terms of time consumption and cost, squashed on membrane, HotSHOT, and PBS were the fastest, while HotSHOT and PBS were the cheapest. In summary, HotSHOT was accurate, fast, simple, and sufficiently sensitive to detect this bacterium within the vector. Additionally, cross-contamination with CaLsol was assessed in the ethanol solutions where <i>B. trigonica</i> specimens were usually collected and preserved. CaLsol-free psyllids were CaLsol-positive after incubation with CaLsol-positive specimens. This work provides a valuable guide when choosing a method to detect CaLsol in vectors according to the purpose of the study.
ISSN:2076-2607