An ancient coronavirus from individuals in France, circa 16th century

Objectives: At the time when the COVID-19 pandemic was responsible for more than six million deaths worldwide, the antiquity of coronaviruses remains undefined. We investigated individuals buried during the 16th century in France for the direct and paleoserological diagnosis of the coronavirus. Meth...

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Main Authors: Hamadou Oumarou Hama, Thomas Chenal, Olivier Pible, Guylaine Miotello, Jean Armengaud, Michel Drancourt
Format: Article
Language:English
Published: Elsevier 2023-06-01
Series:International Journal of Infectious Diseases
Subjects:
Online Access:http://www.sciencedirect.com/science/article/pii/S1201971223000930
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author Hamadou Oumarou Hama
Thomas Chenal
Olivier Pible
Guylaine Miotello
Jean Armengaud
Michel Drancourt
author_facet Hamadou Oumarou Hama
Thomas Chenal
Olivier Pible
Guylaine Miotello
Jean Armengaud
Michel Drancourt
author_sort Hamadou Oumarou Hama
collection DOAJ
description Objectives: At the time when the COVID-19 pandemic was responsible for more than six million deaths worldwide, the antiquity of coronaviruses remains undefined. We investigated individuals buried during the 16th century in France for the direct and paleoserological diagnosis of the coronavirus. Methods: The 2011-2012 excavation of Abbey Saint-Pierre in Baume-Les-Messieurs, France uncovered 12 skeletons of individuals from the 13th to the 18th century. The total proteins extracted from dental pulps were subjected to microbial paleoserology, targeting SARS-CoV-2, human-associated coronavirus (HCoV)-229E, and OC43 antigens and for coronavirus peptide research using metaproteomics, in parallel to negative controls. Results: Three peptide sequences totaling 36 amino acids indicative of a coronavirus were retrieved from the dental pulp remains collected from two individuals buried circa 16th century, in whom paleoserology confirmed a specific immunological response against modern-day SARS-CoV-2 and HCoV-229E. Conclusion: We provide serological and proteomic evidence for a betacoronavirus with no modern correspondent, infecting populations in the 16th century, extending the antiquity of coronaviruses by more than three centuries. Historical, archaeozoological, and paleoproteomic data suggested close contacts between these two individuals and domestic swine, cattle, and poultry, suggesting an ancient zoonotic coronavirus. Coronaviruses have been undesirable companions of populations long before the ongoing coronavirus disease 2019 outbreak emerged.
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spelling doaj.art-07cd8c8271c844b8a20d8b86c562cae82023-04-06T06:10:22ZengElsevierInternational Journal of Infectious Diseases1201-97122023-06-01131712An ancient coronavirus from individuals in France, circa 16th centuryHamadou Oumarou Hama0Thomas Chenal1Olivier Pible2Guylaine Miotello3Jean Armengaud4Michel Drancourt5Aix Marseille Université, IRD, MEPHI, IHU Méditerranée Infection, 13005 Marseille, France; Corresponding author.CNRS, UMR 6298 ArTeHiS, 21000 Dijon, FranceUniversité Paris-Saclay, CEA, INRAE, Département Médicaments et Technologies pour la Santé (DMTS), SPI, 30200 Bagnols sur Cèze, FranceUniversité Paris-Saclay, CEA, INRAE, Département Médicaments et Technologies pour la Santé (DMTS), SPI, 30200 Bagnols sur Cèze, FranceUniversité Paris-Saclay, CEA, INRAE, Département Médicaments et Technologies pour la Santé (DMTS), SPI, 30200 Bagnols sur Cèze, FranceAix Marseille Université, IRD, MEPHI, IHU Méditerranée Infection, 13005 Marseille, FranceObjectives: At the time when the COVID-19 pandemic was responsible for more than six million deaths worldwide, the antiquity of coronaviruses remains undefined. We investigated individuals buried during the 16th century in France for the direct and paleoserological diagnosis of the coronavirus. Methods: The 2011-2012 excavation of Abbey Saint-Pierre in Baume-Les-Messieurs, France uncovered 12 skeletons of individuals from the 13th to the 18th century. The total proteins extracted from dental pulps were subjected to microbial paleoserology, targeting SARS-CoV-2, human-associated coronavirus (HCoV)-229E, and OC43 antigens and for coronavirus peptide research using metaproteomics, in parallel to negative controls. Results: Three peptide sequences totaling 36 amino acids indicative of a coronavirus were retrieved from the dental pulp remains collected from two individuals buried circa 16th century, in whom paleoserology confirmed a specific immunological response against modern-day SARS-CoV-2 and HCoV-229E. Conclusion: We provide serological and proteomic evidence for a betacoronavirus with no modern correspondent, infecting populations in the 16th century, extending the antiquity of coronaviruses by more than three centuries. Historical, archaeozoological, and paleoproteomic data suggested close contacts between these two individuals and domestic swine, cattle, and poultry, suggesting an ancient zoonotic coronavirus. Coronaviruses have been undesirable companions of populations long before the ongoing coronavirus disease 2019 outbreak emerged.http://www.sciencedirect.com/science/article/pii/S1201971223000930CoronavirusDental pulpPaleoserologyPaleoproteomicSARS-CoV-2229E
spellingShingle Hamadou Oumarou Hama
Thomas Chenal
Olivier Pible
Guylaine Miotello
Jean Armengaud
Michel Drancourt
An ancient coronavirus from individuals in France, circa 16th century
International Journal of Infectious Diseases
Coronavirus
Dental pulp
Paleoserology
Paleoproteomic
SARS-CoV-2
229E
title An ancient coronavirus from individuals in France, circa 16th century
title_full An ancient coronavirus from individuals in France, circa 16th century
title_fullStr An ancient coronavirus from individuals in France, circa 16th century
title_full_unstemmed An ancient coronavirus from individuals in France, circa 16th century
title_short An ancient coronavirus from individuals in France, circa 16th century
title_sort ancient coronavirus from individuals in france circa 16th century
topic Coronavirus
Dental pulp
Paleoserology
Paleoproteomic
SARS-CoV-2
229E
url http://www.sciencedirect.com/science/article/pii/S1201971223000930
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