Assembly of the mitochondrial genome of the hydrothermal vent crab Segonzacia mesatlantica and detection of potential nuclear pseudogenes
We assembled the mitogenome of the Bythograeid crab Segonzacia mesatlantica, using long-range amplification of the mitochondrial genome. The mitogenome is 15,521 base pair long (33.8% A, 21.7% C, 10.5% G, 34% T) with 13 protein-coding genes, 2 ribosomal RNA genes, 22 transfer RNAs, and a 624 bp AT-r...
| Main Authors: | , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2017-01-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2017.1318674 |
| _version_ | 1797640847871705088 |
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| author | Perrine Mandon Laetitia Aznar-Cormano Stéphane Hourdez Sarah Samadi |
| author_facet | Perrine Mandon Laetitia Aznar-Cormano Stéphane Hourdez Sarah Samadi |
| author_sort | Perrine Mandon |
| collection | DOAJ |
| description | We assembled the mitogenome of the Bythograeid crab Segonzacia mesatlantica, using long-range amplification of the mitochondrial genome. The mitogenome is 15,521 base pair long (33.8% A, 21.7% C, 10.5% G, 34% T) with 13 protein-coding genes, 2 ribosomal RNA genes, 22 transfer RNAs, and a 624 bp AT-rich region. The gene arrangement is similar to other Brachyuran species. A whole genome shotgun sequencing approach revealed the presence of mitochondrial pseudogenes in the nuclear genome. This fifth mitogenome for a species of Bythograeidae should help resolve the puzzling question of the evolutionary origin of a family limited to deep-sea hydrothermal vents. |
| first_indexed | 2024-03-11T13:36:57Z |
| format | Article |
| id | doaj.art-080b3ce3a8354a939d8633538bce78d9 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:36:57Z |
| publishDate | 2017-01-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-080b3ce3a8354a939d8633538bce78d92023-11-02T15:42:56ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592017-01-012129129310.1080/23802359.2017.13186741318674Assembly of the mitochondrial genome of the hydrothermal vent crab Segonzacia mesatlantica and detection of potential nuclear pseudogenesPerrine Mandon0Laetitia Aznar-Cormano1Stéphane Hourdez2Sarah Samadi3Sorbonne Universités, Institut de Systématique, Evolution, Biodiversité, (ISYEB – UMR 7205 – CNRS, MNHN, UPMC, EPHE)Sorbonne Universités, Institut de Systématique, Evolution, Biodiversité, (ISYEB – UMR 7205 – CNRS, MNHN, UPMC, EPHE)Sorbonne Universités, UPMC Univ Paris 6, Station Biologique de RoscoffSorbonne Universités, Institut de Systématique, Evolution, Biodiversité, (ISYEB – UMR 7205 – CNRS, MNHN, UPMC, EPHE)We assembled the mitogenome of the Bythograeid crab Segonzacia mesatlantica, using long-range amplification of the mitochondrial genome. The mitogenome is 15,521 base pair long (33.8% A, 21.7% C, 10.5% G, 34% T) with 13 protein-coding genes, 2 ribosomal RNA genes, 22 transfer RNAs, and a 624 bp AT-rich region. The gene arrangement is similar to other Brachyuran species. A whole genome shotgun sequencing approach revealed the presence of mitochondrial pseudogenes in the nuclear genome. This fifth mitogenome for a species of Bythograeidae should help resolve the puzzling question of the evolutionary origin of a family limited to deep-sea hydrothermal vents.http://dx.doi.org/10.1080/23802359.2017.1318674mitochondrial genomesegonzacia mesatlanticabythograeidaepseudogenesnext-generation sequencingmid-atlantic ridge vents |
| spellingShingle | Perrine Mandon Laetitia Aznar-Cormano Stéphane Hourdez Sarah Samadi Assembly of the mitochondrial genome of the hydrothermal vent crab Segonzacia mesatlantica and detection of potential nuclear pseudogenes Mitochondrial DNA. Part B. Resources mitochondrial genome segonzacia mesatlantica bythograeidae pseudogenes next-generation sequencing mid-atlantic ridge vents |
| title | Assembly of the mitochondrial genome of the hydrothermal vent crab Segonzacia mesatlantica and detection of potential nuclear pseudogenes |
| title_full | Assembly of the mitochondrial genome of the hydrothermal vent crab Segonzacia mesatlantica and detection of potential nuclear pseudogenes |
| title_fullStr | Assembly of the mitochondrial genome of the hydrothermal vent crab Segonzacia mesatlantica and detection of potential nuclear pseudogenes |
| title_full_unstemmed | Assembly of the mitochondrial genome of the hydrothermal vent crab Segonzacia mesatlantica and detection of potential nuclear pseudogenes |
| title_short | Assembly of the mitochondrial genome of the hydrothermal vent crab Segonzacia mesatlantica and detection of potential nuclear pseudogenes |
| title_sort | assembly of the mitochondrial genome of the hydrothermal vent crab segonzacia mesatlantica and detection of potential nuclear pseudogenes |
| topic | mitochondrial genome segonzacia mesatlantica bythograeidae pseudogenes next-generation sequencing mid-atlantic ridge vents |
| url | http://dx.doi.org/10.1080/23802359.2017.1318674 |
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