CRUP: a comprehensive framework to predict condition-specific regulatory units
Abstract We present the software Condition-specific Regulatory Units Prediction (CRUP) to infer from epigenetic marks a list of regulatory units consisting of dynamically changing enhancers with their target genes. The workflow consists of a novel pre-trained enhancer predictor that can be reliably...
Main Authors: | Anna Ramisch, Verena Heinrich, Laura V. Glaser, Alisa Fuchs, Xinyi Yang, Philipp Benner, Robert Schöpflin, Na Li, Sarah Kinkley, Anja Römer-Hillmann, John Longinotto, Steffen Heyne, Beate Czepukojc, Sonja M. Kessler, Alexandra K. Kiemer, Cristina Cadenas, Laura Arrigoni, Nina Gasparoni, Thomas Manke, Thomas Pap, John A. Pospisilik, Jan Hengstler, Jörn Walter, Sebastiaan H. Meijsing, Ho-Ryun Chung, Martin Vingron |
---|---|
Format: | Article |
Language: | English |
Published: |
BMC
2019-11-01
|
Series: | Genome Biology |
Subjects: | |
Online Access: | http://link.springer.com/article/10.1186/s13059-019-1860-7 |
Similar Items
-
Predicting enhancers in mammalian genomes using supervised hidden Markov models
by: Tobias Zehnder, et al.
Published: (2019-03-01) -
Actualización en crup viral para médicos de atención primaria
by: Natalia Salazar Campos, et al.
Published: (2020-06-01) -
Classifying human promoters by occupancy patterns identifies recurring sequence elements, combinatorial binding, and spatial interactions
by: Xinyi Yang, et al.
Published: (2018-11-01) -
A Review on Surface-Enhanced Raman Scattering
by: Roberto Pilot, et al.
Published: (2019-04-01) -
An intriguing characteristic of enhancer-promoter interactions
by: Amlan Talukder, et al.
Published: (2021-03-01)