Complete chloroplast genome of the rare medicinal vegetable Allium hookeri
Allium hookeri is a rare medicinal plant with unique flavor. In this study, the first complete chloroplast (cp) genome of A. hookeri was sequenced and assembled based on the next generation sequencing. The cp genome is 153,592 bp in length, including a large single-copy (LSC) region of 82,609 bp, a...
| Main Authors: | , , , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2022-01-01
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| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2021.2003262 |
| _version_ | 1797638683640201216 |
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| author | Fengming Ren Liqiang Wang Wei Zhuo Dongliang Chen Hongyan Huang Lansheng Zhang |
| author_facet | Fengming Ren Liqiang Wang Wei Zhuo Dongliang Chen Hongyan Huang Lansheng Zhang |
| author_sort | Fengming Ren |
| collection | DOAJ |
| description | Allium hookeri is a rare medicinal plant with unique flavor. In this study, the first complete chloroplast (cp) genome of A. hookeri was sequenced and assembled based on the next generation sequencing. The cp genome is 153,592 bp in length, including a large single-copy (LSC) region of 82,609 bp, a small single-copy (SSC) region of 17,487 bp, and a pair of inverted repeat (IR) regions of 26,748 bp each. The genome encodes 131 genes, including 86 protein-coding genes, 39 tRNA genes, and six rRNA genes. The GC content of whole genome is 36.99%. The phylogenetic analysis based on 24 complete cp sequences revealed that A. hookeri was at the base of the phylogenetic tree, indicating an older species in the Allium genus. |
| first_indexed | 2024-03-11T13:06:08Z |
| format | Article |
| id | doaj.art-0843a9873cd240789ae35cbfb05d8545 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:06:08Z |
| publishDate | 2022-01-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-0843a9873cd240789ae35cbfb05d85452023-11-03T14:36:00ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592022-01-01716710.1080/23802359.2021.20032622003262Complete chloroplast genome of the rare medicinal vegetable Allium hookeriFengming Ren0Liqiang Wang1Wei Zhuo2Dongliang Chen3Hongyan Huang4Lansheng Zhang5College of Applied Technology, Lijiang Teachers CollegeCollege of Pharmacy, Heze UniversityChongqing Institute of Medicinal Plant Cultivation, Research and Utilization on Characteristic Biological Resources of Sichuan and Chongqing Co-construction LabChongqing Shangyao Huiyuan Pharmaceutical co. LTDChongqing Institute of Medicinal Plant Cultivation, Research and Utilization on Characteristic Biological Resources of Sichuan and Chongqing Co-construction LabCollege of Applied Technology, Lijiang Teachers CollegeAllium hookeri is a rare medicinal plant with unique flavor. In this study, the first complete chloroplast (cp) genome of A. hookeri was sequenced and assembled based on the next generation sequencing. The cp genome is 153,592 bp in length, including a large single-copy (LSC) region of 82,609 bp, a small single-copy (SSC) region of 17,487 bp, and a pair of inverted repeat (IR) regions of 26,748 bp each. The genome encodes 131 genes, including 86 protein-coding genes, 39 tRNA genes, and six rRNA genes. The GC content of whole genome is 36.99%. The phylogenetic analysis based on 24 complete cp sequences revealed that A. hookeri was at the base of the phylogenetic tree, indicating an older species in the Allium genus.http://dx.doi.org/10.1080/23802359.2021.2003262chloroplast genomeallium hookerimedicinal vegetablephylogenetic analysis |
| spellingShingle | Fengming Ren Liqiang Wang Wei Zhuo Dongliang Chen Hongyan Huang Lansheng Zhang Complete chloroplast genome of the rare medicinal vegetable Allium hookeri Mitochondrial DNA. Part B. Resources chloroplast genome allium hookeri medicinal vegetable phylogenetic analysis |
| title | Complete chloroplast genome of the rare medicinal vegetable Allium hookeri |
| title_full | Complete chloroplast genome of the rare medicinal vegetable Allium hookeri |
| title_fullStr | Complete chloroplast genome of the rare medicinal vegetable Allium hookeri |
| title_full_unstemmed | Complete chloroplast genome of the rare medicinal vegetable Allium hookeri |
| title_short | Complete chloroplast genome of the rare medicinal vegetable Allium hookeri |
| title_sort | complete chloroplast genome of the rare medicinal vegetable allium hookeri |
| topic | chloroplast genome allium hookeri medicinal vegetable phylogenetic analysis |
| url | http://dx.doi.org/10.1080/23802359.2021.2003262 |
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