Estimating tissue-specific peptide abundance from public RNA-Seq data

Estimating tissue-specific peptide abundance from public RNA-Seq data

Several novel MHC class I epitope prediction tools additionally incorporate the abundance levels of the peptides’ source antigens and have shown improved performance for predicting immunogenicity. Such tools require the user to input the MHC alleles and peptide sequences of interest, as well as the...

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Bibliographic Details
Main Authors: Angela Frentzen, Jason A. Greenbaum, Haeuk Kim, Bjoern Peters, Zeynep Koşaloğlu-Yalçın
Format: Article
Language:English
Published: Frontiers Media S.A. 2023-01-01
Series:Frontiers in Genetics
Subjects:
RNA-Seq
RNA sequencing
peptide (pep)
prediction
ligands
tool
Online Access:https://www.frontiersin.org/articles/10.3389/fgene.2023.1082168/full

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