Complete genome sequence of Clostridium perfringens B20, a bacteriocin-producing pathogen
Clostridium perfringens B20 was isolated from chicken feces collected from a local farm associated with Chung-Ang University (Anseong, Korea). The whole genome of C. perfringens B20 was sequenced using the PacBio RS II platform and assemble...
| Main Authors: | , |
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| Format: | Article |
| Language: | English |
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Korean Society of Animal Sciences and Technology
2021-11-01
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| Series: | Journal of Animal Science and Technology |
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| Online Access: | http://www.ejast.org/archive/view_article?pid=jast-63-6-1468 |
| _version_ | 1819241116272164864 |
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| author | Arxel G. Elnar Geun-Bae Kim |
| author_facet | Arxel G. Elnar Geun-Bae Kim |
| author_sort | Arxel G. Elnar |
| collection | DOAJ |
| description | Clostridium perfringens B20 was isolated from chicken feces
collected from a local farm associated with Chung-Ang University (Anseong,
Korea). The whole genome of C. perfringens B20 was sequenced
using the PacBio RS II platform and assembled de novo. The
genome is 2,982,563 bp long and assembled in two contigs. Annotation analyses
revealed 2,668 protein-coding sequences, 30 rRNA genes, and 94 tRNA genes, with
28.2% G + C (guanine + cytosine) content. In silico genomic
analysis revealed the presence of genes encoding a class IId bacteriocin,
lactococcin A, and associated ABC transporter and immunity proteins, as well as
a putative bacteriocin gene. |
| first_indexed | 2024-12-23T14:18:47Z |
| format | Article |
| id | doaj.art-08c48676d0254dfe890188dd67c05051 |
| institution | Directory Open Access Journal |
| issn | 2672-0191 2055-0391 |
| language | English |
| last_indexed | 2024-12-23T14:18:47Z |
| publishDate | 2021-11-01 |
| publisher | Korean Society of Animal Sciences and Technology |
| record_format | Article |
| series | Journal of Animal Science and Technology |
| spelling | doaj.art-08c48676d0254dfe890188dd67c050512022-12-21T17:43:50ZengKorean Society of Animal Sciences and TechnologyJournal of Animal Science and Technology2672-01912055-03912021-11-016361468147210.5187/jast.2021.e113jast-63-6-1468Complete genome sequence of Clostridium perfringens B20, a bacteriocin-producing pathogenArxel G. Elnar0Geun-Bae Kim1Department of Animal Science and Technology, Chung-Ang University, Department of Animal Science and Technology, Chung-Ang University, Clostridium perfringens B20 was isolated from chicken feces collected from a local farm associated with Chung-Ang University (Anseong, Korea). The whole genome of C. perfringens B20 was sequenced using the PacBio RS II platform and assembled de novo. The genome is 2,982,563 bp long and assembled in two contigs. Annotation analyses revealed 2,668 protein-coding sequences, 30 rRNA genes, and 94 tRNA genes, with 28.2% G + C (guanine + cytosine) content. In silico genomic analysis revealed the presence of genes encoding a class IId bacteriocin, lactococcin A, and associated ABC transporter and immunity proteins, as well as a putative bacteriocin gene.http://www.ejast.org/archive/view_article?pid=jast-63-6-1468clostridium perfringenswhole genome sequencepathogenvirulencebacteriocinlactococcin a |
| spellingShingle | Arxel G. Elnar Geun-Bae Kim Complete genome sequence of Clostridium perfringens B20, a bacteriocin-producing pathogen Journal of Animal Science and Technology clostridium perfringens whole genome sequence pathogen virulence bacteriocin lactococcin a |
| title | Complete genome sequence of Clostridium perfringens
B20, a bacteriocin-producing pathogen |
| title_full | Complete genome sequence of Clostridium perfringens
B20, a bacteriocin-producing pathogen |
| title_fullStr | Complete genome sequence of Clostridium perfringens
B20, a bacteriocin-producing pathogen |
| title_full_unstemmed | Complete genome sequence of Clostridium perfringens
B20, a bacteriocin-producing pathogen |
| title_short | Complete genome sequence of Clostridium perfringens
B20, a bacteriocin-producing pathogen |
| title_sort | complete genome sequence of clostridium perfringens b20 a bacteriocin producing pathogen |
| topic | clostridium perfringens whole genome sequence pathogen virulence bacteriocin lactococcin a |
| url | http://www.ejast.org/archive/view_article?pid=jast-63-6-1468 |
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