Rapid Detection and Molecular Typing of Dengue Virus by Using Multiplex-Nested-RT-PCR
world. We have evaluated the combination of one-step RT-PCR and multiplex nested PCR assays for detecting dengue viruses from clinical samples. Twelve patients were screened for the dengue virus, using a pair of primers that conserve for several Flavivirus. The results showed that in 12 suspect pati...
| Main Authors: | , , , , |
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| Format: | Article |
| Language: | English |
| Published: |
Universitas Gadjah Mada, Yogyakarta
2006-12-01
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| Series: | Indonesian Journal of Biotechnology |
| Online Access: | https://jurnal.ugm.ac.id/ijbiotech/article/view/7569 |
| _version_ | 1818822159336734720 |
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| author | Nastiti Wijayanti Hera Nirwati Tri Wibawa Aris Haryanto S. Sutaryo |
| author_facet | Nastiti Wijayanti Hera Nirwati Tri Wibawa Aris Haryanto S. Sutaryo |
| author_sort | Nastiti Wijayanti |
| collection | DOAJ |
| description | world. We have evaluated the combination of one-step RT-PCR and multiplex nested PCR assays for detecting
dengue viruses from clinical samples. Twelve patients were screened for the dengue virus, using a pair of primers
that conserve for several Flavivirus. The results showed that in 12 suspect patients, 100% were positive for Flavivirus
and there are some genotypic variation among them, that indicated by several RT-PCR products higher than 511 bp,
the expected product for RT-PCR. Further assay was performed to clarify the presence and serotypes of dengue virus
using multiplex nested PCR. Serotyping results indicated that 83,3% of samples can be confirmed for dengue virus.
Among the dengue virus positive 16,7 % are dengue-2, 16.7 % are dengue-3, and the most common 50% are dengue-4,
whereas dengue-1 were not found among the patients. The combination of RT-PCR and multiplex nested PCR assay
can be used for rapid analysis dengue samples in early phase which is potentially useful for clinical, epidemiology
and also evolutionary studies.
Key words: Flavivirus, dengue virus, serotype, RT-PCR, multiplex nested PCR |
| first_indexed | 2024-12-18T23:19:39Z |
| format | Article |
| id | doaj.art-09e5346c7c8544848df59b278115ffb9 |
| institution | Directory Open Access Journal |
| issn | 0853-8654 2089-2241 |
| language | English |
| last_indexed | 2024-12-18T23:19:39Z |
| publishDate | 2006-12-01 |
| publisher | Universitas Gadjah Mada, Yogyakarta |
| record_format | Article |
| series | Indonesian Journal of Biotechnology |
| spelling | doaj.art-09e5346c7c8544848df59b278115ffb92022-12-21T20:48:02ZengUniversitas Gadjah Mada, YogyakartaIndonesian Journal of Biotechnology0853-86542089-22412006-12-0111210.22146/ijbiotech.75696370Rapid Detection and Molecular Typing of Dengue Virus by Using Multiplex-Nested-RT-PCRNastiti WijayantiHera NirwatiTri WibawaAris HaryantoS. Sutaryoworld. We have evaluated the combination of one-step RT-PCR and multiplex nested PCR assays for detecting dengue viruses from clinical samples. Twelve patients were screened for the dengue virus, using a pair of primers that conserve for several Flavivirus. The results showed that in 12 suspect patients, 100% were positive for Flavivirus and there are some genotypic variation among them, that indicated by several RT-PCR products higher than 511 bp, the expected product for RT-PCR. Further assay was performed to clarify the presence and serotypes of dengue virus using multiplex nested PCR. Serotyping results indicated that 83,3% of samples can be confirmed for dengue virus. Among the dengue virus positive 16,7 % are dengue-2, 16.7 % are dengue-3, and the most common 50% are dengue-4, whereas dengue-1 were not found among the patients. The combination of RT-PCR and multiplex nested PCR assay can be used for rapid analysis dengue samples in early phase which is potentially useful for clinical, epidemiology and also evolutionary studies. Key words: Flavivirus, dengue virus, serotype, RT-PCR, multiplex nested PCRhttps://jurnal.ugm.ac.id/ijbiotech/article/view/7569 |
| spellingShingle | Nastiti Wijayanti Hera Nirwati Tri Wibawa Aris Haryanto S. Sutaryo Rapid Detection and Molecular Typing of Dengue Virus by Using Multiplex-Nested-RT-PCR Indonesian Journal of Biotechnology |
| title | Rapid Detection and Molecular Typing of Dengue Virus by Using Multiplex-Nested-RT-PCR |
| title_full | Rapid Detection and Molecular Typing of Dengue Virus by Using Multiplex-Nested-RT-PCR |
| title_fullStr | Rapid Detection and Molecular Typing of Dengue Virus by Using Multiplex-Nested-RT-PCR |
| title_full_unstemmed | Rapid Detection and Molecular Typing of Dengue Virus by Using Multiplex-Nested-RT-PCR |
| title_short | Rapid Detection and Molecular Typing of Dengue Virus by Using Multiplex-Nested-RT-PCR |
| title_sort | rapid detection and molecular typing of dengue virus by using multiplex nested rt pcr |
| url | https://jurnal.ugm.ac.id/ijbiotech/article/view/7569 |
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