The complete chloroplast genome of Ziziphus mairei Dode 1908 (Rhamnaceae), an endangered perennial plant in Yunnan, China
AbstractZiziphus mairei Dode 1908 (Rhamnaceae) is a rare and endangered perennial plant in Yunnan, China. In this study, we sequenced, assembled, and annotated the complete chloroplast genome of Z. mairei. The complete chloroplast genome was a closed circular molecule of 161,546 bp with a typical te...
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2023-12-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | https://www.tandfonline.com/doi/10.1080/23802359.2023.2290844 |
| _version_ | 1797244388939661312 |
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| author | Shidong Wang Yunqi Liu Rui Li Shubao Wang Yuan Huang |
| author_facet | Shidong Wang Yunqi Liu Rui Li Shubao Wang Yuan Huang |
| author_sort | Shidong Wang |
| collection | DOAJ |
| description | AbstractZiziphus mairei Dode 1908 (Rhamnaceae) is a rare and endangered perennial plant in Yunnan, China. In this study, we sequenced, assembled, and annotated the complete chloroplast genome of Z. mairei. The complete chloroplast genome was a closed circular molecule of 161,546 bp with a typical tetrad structure, containing a large single-copy (LSC) region of 89,252 bp, a small single-copy (SSC) region of 19,364 bp, and a pair of inverted repeat (IR) regions of 26,465 bp. A total of 128 genes have been annotated, including 83 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. The GC content is 36.7%. Phylogenetic analysis revealed that Z. mairei is closely related to Z. hajarensis, Z. jujuba, and Z. jujuba var. spinosa. Our results provide useful genetic resources for further studies on the conservation and evolution of Z. mairei. |
| first_indexed | 2024-03-08T14:53:58Z |
| format | Article |
| id | doaj.art-0a1f495968344c62b744e7f83386df2f |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-04-24T19:10:14Z |
| publishDate | 2023-12-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-0a1f495968344c62b744e7f83386df2f2024-03-26T11:28:12ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592023-12-018121459146310.1080/23802359.2023.2290844The complete chloroplast genome of Ziziphus mairei Dode 1908 (Rhamnaceae), an endangered perennial plant in Yunnan, ChinaShidong Wang0Yunqi Liu1Rui Li2Shubao Wang3Yuan Huang4School of Life Sciences, Yunnan Normal University, Kunming, P. R. ChinaSchool of Life Sciences, Yunnan Normal University, Kunming, P. R. ChinaSchool of Life Sciences, Yunnan Normal University, Kunming, P. R. ChinaSchool of Life Sciences, Yunnan Normal University, Kunming, P. R. ChinaSchool of Life Sciences, Yunnan Normal University, Kunming, P. R. ChinaAbstractZiziphus mairei Dode 1908 (Rhamnaceae) is a rare and endangered perennial plant in Yunnan, China. In this study, we sequenced, assembled, and annotated the complete chloroplast genome of Z. mairei. The complete chloroplast genome was a closed circular molecule of 161,546 bp with a typical tetrad structure, containing a large single-copy (LSC) region of 89,252 bp, a small single-copy (SSC) region of 19,364 bp, and a pair of inverted repeat (IR) regions of 26,465 bp. A total of 128 genes have been annotated, including 83 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. The GC content is 36.7%. Phylogenetic analysis revealed that Z. mairei is closely related to Z. hajarensis, Z. jujuba, and Z. jujuba var. spinosa. Our results provide useful genetic resources for further studies on the conservation and evolution of Z. mairei.https://www.tandfonline.com/doi/10.1080/23802359.2023.2290844Complete chloroplast genomephylogenetic analysisRhamnaceaeZiziphus mairei |
| spellingShingle | Shidong Wang Yunqi Liu Rui Li Shubao Wang Yuan Huang The complete chloroplast genome of Ziziphus mairei Dode 1908 (Rhamnaceae), an endangered perennial plant in Yunnan, China Mitochondrial DNA. Part B. Resources Complete chloroplast genome phylogenetic analysis Rhamnaceae Ziziphus mairei |
| title | The complete chloroplast genome of Ziziphus mairei Dode 1908 (Rhamnaceae), an endangered perennial plant in Yunnan, China |
| title_full | The complete chloroplast genome of Ziziphus mairei Dode 1908 (Rhamnaceae), an endangered perennial plant in Yunnan, China |
| title_fullStr | The complete chloroplast genome of Ziziphus mairei Dode 1908 (Rhamnaceae), an endangered perennial plant in Yunnan, China |
| title_full_unstemmed | The complete chloroplast genome of Ziziphus mairei Dode 1908 (Rhamnaceae), an endangered perennial plant in Yunnan, China |
| title_short | The complete chloroplast genome of Ziziphus mairei Dode 1908 (Rhamnaceae), an endangered perennial plant in Yunnan, China |
| title_sort | complete chloroplast genome of ziziphus mairei dode 1908 rhamnaceae an endangered perennial plant in yunnan china |
| topic | Complete chloroplast genome phylogenetic analysis Rhamnaceae Ziziphus mairei |
| url | https://www.tandfonline.com/doi/10.1080/23802359.2023.2290844 |
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