Genome-wide identification and annotation of the Nuclear-factor YA gene family in cassava (Manihot esculenta Crantz)
Nuclear factor Y (NF-Y) is a transcription factor which plays an important role in the regulation of various developmental processes and stress responses in plants. By using various bioinformatics tools, the identification and analyses of the NF-YA subunit of cassava (Manihot esculenta Crantz) have...
| Main Authors: | , , , |
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| Format: | Article |
| Language: | English |
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Vietnam Ministry of Science and Technology
2017-09-01
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| Series: | Vietnam Journal of Science, Technology and Engineering |
| Subjects: | |
| Online Access: | https://vietnamscience.vjst.vn/index.php/vjste/article/view/285 |
| _version_ | 1797937661395075072 |
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| author | Duc Ha Chu Thi Thuy Tam Do Xuan Dac Le Thi Ly Thu Pham |
| author_facet | Duc Ha Chu Thi Thuy Tam Do Xuan Dac Le Thi Ly Thu Pham |
| author_sort | Duc Ha Chu |
| collection | DOAJ |
| description |
Nuclear factor Y (NF-Y) is a transcription factor which plays an important role in the regulation of various developmental processes and stress responses in plants. By using various bioinformatics tools, the identification and analyses of the NF-YA subunit of cassava (Manihot esculenta Crantz) have been attempted in this study. A total of 12 members of the NF-YA gene family were identified in the cassava genome. They were located on the 18 cassava chromosomes with different frequencies. Several initial structural analyses of the NF-YA family were also performed. Among them, the typical gene organization of the MeNF-YA gene family contained 5 exons/4 introns. Interestingly, the conserved region of NF-YA was characterized by the interaction of NF-YB/C domain and the DNA binding domain. This study provided information on NF-Y in plants.
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| first_indexed | 2024-04-10T18:48:51Z |
| format | Article |
| id | doaj.art-0adb5df9f2d740929b824cc3a224b2a3 |
| institution | Directory Open Access Journal |
| issn | 2525-2461 2615-9937 |
| language | English |
| last_indexed | 2024-04-10T18:48:51Z |
| publishDate | 2017-09-01 |
| publisher | Vietnam Ministry of Science and Technology |
| record_format | Article |
| series | Vietnam Journal of Science, Technology and Engineering |
| spelling | doaj.art-0adb5df9f2d740929b824cc3a224b2a32023-02-01T08:22:38ZengVietnam Ministry of Science and TechnologyVietnam Journal of Science, Technology and Engineering2525-24612615-99372017-09-0159310.31276/VJSTE.59(3).39Genome-wide identification and annotation of the Nuclear-factor YA gene family in cassava (Manihot esculenta Crantz)Duc Ha Chu0 Thi Thuy Tam Do1Xuan Dac Le2Thi Ly Thu Pham3Agricultural Genetics Institute, Vietnam Academy of Agricultural SciencesAgricultural Genetics Institute, Vietnam Academy of Agricultural Sciences; University of Science and Technology of HanoiInstitute of Tropical Ecology, Vietnam-Russia Tropical CenterAgricultural Genetics Institute, Vietnam Academy of Agricultural Sciences Nuclear factor Y (NF-Y) is a transcription factor which plays an important role in the regulation of various developmental processes and stress responses in plants. By using various bioinformatics tools, the identification and analyses of the NF-YA subunit of cassava (Manihot esculenta Crantz) have been attempted in this study. A total of 12 members of the NF-YA gene family were identified in the cassava genome. They were located on the 18 cassava chromosomes with different frequencies. Several initial structural analyses of the NF-YA family were also performed. Among them, the typical gene organization of the MeNF-YA gene family contained 5 exons/4 introns. Interestingly, the conserved region of NF-YA was characterized by the interaction of NF-YB/C domain and the DNA binding domain. This study provided information on NF-Y in plants. https://vietnamscience.vjst.vn/index.php/vjste/article/view/285cassavagenein silicoNF-YAtranscription factor |
| spellingShingle | Duc Ha Chu Thi Thuy Tam Do Xuan Dac Le Thi Ly Thu Pham Genome-wide identification and annotation of the Nuclear-factor YA gene family in cassava (Manihot esculenta Crantz) Vietnam Journal of Science, Technology and Engineering cassava gene in silico NF-YA transcription factor |
| title | Genome-wide identification and annotation of the Nuclear-factor YA gene family in cassava (Manihot esculenta Crantz) |
| title_full | Genome-wide identification and annotation of the Nuclear-factor YA gene family in cassava (Manihot esculenta Crantz) |
| title_fullStr | Genome-wide identification and annotation of the Nuclear-factor YA gene family in cassava (Manihot esculenta Crantz) |
| title_full_unstemmed | Genome-wide identification and annotation of the Nuclear-factor YA gene family in cassava (Manihot esculenta Crantz) |
| title_short | Genome-wide identification and annotation of the Nuclear-factor YA gene family in cassava (Manihot esculenta Crantz) |
| title_sort | genome wide identification and annotation of the nuclear factor ya gene family in cassava manihot esculenta crantz |
| topic | cassava gene in silico NF-YA transcription factor |
| url | https://vietnamscience.vjst.vn/index.php/vjste/article/view/285 |
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