Complete chloroplast genome sequence of Carpinus oblongifolia (Betulaceae) and phylogenetic analysis
Carpinus oblongifolia (Betulaceae) is a critically endangered species endemic to Jiangsu. In this study, the complete chloroplast (cp) genome of C. oblongifolia was assembled based on next-generation sequencing. The cp genome was 159,086 bp in length, including a large single-copy (LSC) region of 88...
| Main Authors: | , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2019-01-01
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| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2019.1591216 |
| _version_ | 1797639899751383040 |
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| author | Jingru Wang Minghao Wang |
| author_facet | Jingru Wang Minghao Wang |
| author_sort | Jingru Wang |
| collection | DOAJ |
| description | Carpinus oblongifolia (Betulaceae) is a critically endangered species endemic to Jiangsu. In this study, the complete chloroplast (cp) genome of C. oblongifolia was assembled based on next-generation sequencing. The cp genome was 159,086 bp in length, including a large single-copy (LSC) region of 88,190 bp, a small single-copy (SSC) region of 18,765 bp and a pair of inverted repeats (IRs) of 26,066 and 26,067 bp, respectively. The genome contained 124 genes, including 85 protein-coding genes, 30 tRNA genes, and 8 ribosomal RNA genes. The overall GC content of the chloroplast genome was 36.49%. A phylogenetic analysis demonstrated a close relationship between C. oblongifolia and Ostrya rehderiana. |
| first_indexed | 2024-03-11T13:23:08Z |
| format | Article |
| id | doaj.art-0afac6d5ce794a50973d9edb293aa777 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:23:08Z |
| publishDate | 2019-01-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-0afac6d5ce794a50973d9edb293aa7772023-11-03T10:06:43ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592019-01-01411304130510.1080/23802359.2019.15912161591216Complete chloroplast genome sequence of Carpinus oblongifolia (Betulaceae) and phylogenetic analysisJingru Wang0Minghao Wang1Lanzhou UniversityLanzhou UniversityCarpinus oblongifolia (Betulaceae) is a critically endangered species endemic to Jiangsu. In this study, the complete chloroplast (cp) genome of C. oblongifolia was assembled based on next-generation sequencing. The cp genome was 159,086 bp in length, including a large single-copy (LSC) region of 88,190 bp, a small single-copy (SSC) region of 18,765 bp and a pair of inverted repeats (IRs) of 26,066 and 26,067 bp, respectively. The genome contained 124 genes, including 85 protein-coding genes, 30 tRNA genes, and 8 ribosomal RNA genes. The overall GC content of the chloroplast genome was 36.49%. A phylogenetic analysis demonstrated a close relationship between C. oblongifolia and Ostrya rehderiana.http://dx.doi.org/10.1080/23802359.2019.1591216carpinus oblongifoliachloroplast genomephylogenetic analysis |
| spellingShingle | Jingru Wang Minghao Wang Complete chloroplast genome sequence of Carpinus oblongifolia (Betulaceae) and phylogenetic analysis Mitochondrial DNA. Part B. Resources carpinus oblongifolia chloroplast genome phylogenetic analysis |
| title | Complete chloroplast genome sequence of Carpinus oblongifolia (Betulaceae) and phylogenetic analysis |
| title_full | Complete chloroplast genome sequence of Carpinus oblongifolia (Betulaceae) and phylogenetic analysis |
| title_fullStr | Complete chloroplast genome sequence of Carpinus oblongifolia (Betulaceae) and phylogenetic analysis |
| title_full_unstemmed | Complete chloroplast genome sequence of Carpinus oblongifolia (Betulaceae) and phylogenetic analysis |
| title_short | Complete chloroplast genome sequence of Carpinus oblongifolia (Betulaceae) and phylogenetic analysis |
| title_sort | complete chloroplast genome sequence of carpinus oblongifolia betulaceae and phylogenetic analysis |
| topic | carpinus oblongifolia chloroplast genome phylogenetic analysis |
| url | http://dx.doi.org/10.1080/23802359.2019.1591216 |
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