Draft Genomic Resources for the Brown Rot Fungal Pathogen Monilinia laxa
Monilinia laxa is the causal agent of brown rot on stone fruit, and it can cause heavy yield losses during field production and postharvest storage. This article reports the draft genome assembly of the M. laxa Mlax316 strain, obtained using a hybrid genome assembly with both Illumina short-reads an...
| Main Authors: | , , , , , |
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| Format: | Article |
| Language: | English |
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The American Phytopathological Society
2020-02-01
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| Series: | Molecular Plant-Microbe Interactions |
| Subjects: | |
| Online Access: | https://apsjournals.apsnet.org/doi/10.1094/MPMI-08-19-0225-A |
| _version_ | 1811264556896354304 |
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| author | Lucia Landi Stefania Pollastro Caterina Rotolo Gianfranco Romanazzi Francesco Faretra Rita Milvia De Miccolis Angelini |
| author_facet | Lucia Landi Stefania Pollastro Caterina Rotolo Gianfranco Romanazzi Francesco Faretra Rita Milvia De Miccolis Angelini |
| author_sort | Lucia Landi |
| collection | DOAJ |
| description | Monilinia laxa is the causal agent of brown rot on stone fruit, and it can cause heavy yield losses during field production and postharvest storage. This article reports the draft genome assembly of the M. laxa Mlax316 strain, obtained using a hybrid genome assembly with both Illumina short-reads and PacBio long-reads sequencing technologies. The complete draft genome consists of 49 scaffolds with total size of 42.81 Mb, and scaffold N50 of 2,449.4 kb. Annotation of the M. laxa assembly identified 11,163 genes and 12,424 proteins which were functionally annotated. This new genome draft improves current genomic resources available for M. laxa and represents a useful tool for further research into its interactions with host plants and into evolution in the Monilinia genus. |
| first_indexed | 2024-04-12T20:05:17Z |
| format | Article |
| id | doaj.art-0b511c7f9c1f4b459edefe83d8b83b2a |
| institution | Directory Open Access Journal |
| issn | 0894-0282 1943-7706 |
| language | English |
| last_indexed | 2024-04-12T20:05:17Z |
| publishDate | 2020-02-01 |
| publisher | The American Phytopathological Society |
| record_format | Article |
| series | Molecular Plant-Microbe Interactions |
| spelling | doaj.art-0b511c7f9c1f4b459edefe83d8b83b2a2022-12-22T03:18:24ZengThe American Phytopathological SocietyMolecular Plant-Microbe Interactions0894-02821943-77062020-02-0133214514810.1094/MPMI-08-19-0225-ADraft Genomic Resources for the Brown Rot Fungal Pathogen Monilinia laxaLucia Landi0Stefania Pollastro1Caterina Rotolo2Gianfranco Romanazzi3Francesco Faretra4Rita Milvia De Miccolis Angelini5Department of Agricultural, Food and Environmental Sciences, Marche Polytechnic University, Via Brecce Bianche 10, 60131 Ancona, ItalyDepartment of Soil, Plant and Food Sciences, University of Bari Aldo Moro, Via G. Amendola 165/a, 70126 Bari, ItalyDepartment of Soil, Plant and Food Sciences, University of Bari Aldo Moro, Via G. Amendola 165/a, 70126 Bari, ItalyDepartment of Agricultural, Food and Environmental Sciences, Marche Polytechnic University, Via Brecce Bianche 10, 60131 Ancona, ItalyDepartment of Soil, Plant and Food Sciences, University of Bari Aldo Moro, Via G. Amendola 165/a, 70126 Bari, ItalyDepartment of Soil, Plant and Food Sciences, University of Bari Aldo Moro, Via G. Amendola 165/a, 70126 Bari, ItalyMonilinia laxa is the causal agent of brown rot on stone fruit, and it can cause heavy yield losses during field production and postharvest storage. This article reports the draft genome assembly of the M. laxa Mlax316 strain, obtained using a hybrid genome assembly with both Illumina short-reads and PacBio long-reads sequencing technologies. The complete draft genome consists of 49 scaffolds with total size of 42.81 Mb, and scaffold N50 of 2,449.4 kb. Annotation of the M. laxa assembly identified 11,163 genes and 12,424 proteins which were functionally annotated. This new genome draft improves current genomic resources available for M. laxa and represents a useful tool for further research into its interactions with host plants and into evolution in the Monilinia genus.https://apsjournals.apsnet.org/doi/10.1094/MPMI-08-19-0225-Abrown rotde novo assemblygenomicsmetabolomicsnext-generation sequencingproteomics |
| spellingShingle | Lucia Landi Stefania Pollastro Caterina Rotolo Gianfranco Romanazzi Francesco Faretra Rita Milvia De Miccolis Angelini Draft Genomic Resources for the Brown Rot Fungal Pathogen Monilinia laxa Molecular Plant-Microbe Interactions brown rot de novo assembly genomics metabolomics next-generation sequencing proteomics |
| title | Draft Genomic Resources for the Brown Rot Fungal Pathogen Monilinia laxa |
| title_full | Draft Genomic Resources for the Brown Rot Fungal Pathogen Monilinia laxa |
| title_fullStr | Draft Genomic Resources for the Brown Rot Fungal Pathogen Monilinia laxa |
| title_full_unstemmed | Draft Genomic Resources for the Brown Rot Fungal Pathogen Monilinia laxa |
| title_short | Draft Genomic Resources for the Brown Rot Fungal Pathogen Monilinia laxa |
| title_sort | draft genomic resources for the brown rot fungal pathogen monilinia laxa |
| topic | brown rot de novo assembly genomics metabolomics next-generation sequencing proteomics |
| url | https://apsjournals.apsnet.org/doi/10.1094/MPMI-08-19-0225-A |
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