Characterization of the complete chloroplast genome of Ligusticum sinense, as a Chinese herb to treat toothache in China
Ligusticum sinense is a popular herb in Chinese medicine. The circular double-stranded complete chloroplast genome of L. sinense was 146,342 bp in length, exhibiting a typical quadripartite structure. It contained a large single-copy region (LSC) of 91,788 bp, a small single-copy region (SSC) of 17,...
| Main Authors: | , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2020-07-01
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| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2020.1808103 |
| _version_ | 1797639120636346368 |
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| author | Qingwei Wu Hui Wu Li-Kang Wang Xin Zhao |
| author_facet | Qingwei Wu Hui Wu Li-Kang Wang Xin Zhao |
| author_sort | Qingwei Wu |
| collection | DOAJ |
| description | Ligusticum sinense is a popular herb in Chinese medicine. The circular double-stranded complete chloroplast genome of L. sinense was 146,342 bp in length, exhibiting a typical quadripartite structure. It contained a large single-copy region (LSC) of 91,788 bp, a small single-copy region (SSC) of 17,618 bp and two identical inverted repeat (IR) regions of 18,468 bp each. The overall nucleotide composition of chloroplast genome sequence is: A (30.8%), T (31.6%), C (19.2%), G (19.4%) and the total G + C content of 38.6%. The chloroplast genome contained 127 genes, including 83 protein-coding genes, 36 transfer RNA genes and 8 ribosomal RNA genes were annotated. The total of 15 genes duplicated in one of the IR, including 6 tRNA, 4 rRNA, and 5 protein-coding genes. The ML phylogenetic tree indicated that L. sinense is closely related to L. tenuissimum in the phylogenetic relationship. |
| first_indexed | 2024-03-11T13:12:13Z |
| format | Article |
| id | doaj.art-0b8ba369c1f84a74a9159dac3a164088 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:12:13Z |
| publishDate | 2020-07-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-0b8ba369c1f84a74a9159dac3a1640882023-11-03T14:00:32ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592020-07-01533174317510.1080/23802359.2020.18081031808103Characterization of the complete chloroplast genome of Ligusticum sinense, as a Chinese herb to treat toothache in ChinaQingwei Wu0Hui Wu1Li-Kang Wang2Xin Zhao3Central South University Xiangya School of StomatologyTraditional Chinese Medicine Department, The Second People’s Hospital of DatongDepartment of Pain Management, The Third Medical Centre, Chinese PLA General HospitalThe Molecular Pathology Lab, The Second People’s Hospital of DatongLigusticum sinense is a popular herb in Chinese medicine. The circular double-stranded complete chloroplast genome of L. sinense was 146,342 bp in length, exhibiting a typical quadripartite structure. It contained a large single-copy region (LSC) of 91,788 bp, a small single-copy region (SSC) of 17,618 bp and two identical inverted repeat (IR) regions of 18,468 bp each. The overall nucleotide composition of chloroplast genome sequence is: A (30.8%), T (31.6%), C (19.2%), G (19.4%) and the total G + C content of 38.6%. The chloroplast genome contained 127 genes, including 83 protein-coding genes, 36 transfer RNA genes and 8 ribosomal RNA genes were annotated. The total of 15 genes duplicated in one of the IR, including 6 tRNA, 4 rRNA, and 5 protein-coding genes. The ML phylogenetic tree indicated that L. sinense is closely related to L. tenuissimum in the phylogenetic relationship.http://dx.doi.org/10.1080/23802359.2020.1808103ligusticum sinensephylogenetic analysischloroplast genome |
| spellingShingle | Qingwei Wu Hui Wu Li-Kang Wang Xin Zhao Characterization of the complete chloroplast genome of Ligusticum sinense, as a Chinese herb to treat toothache in China Mitochondrial DNA. Part B. Resources ligusticum sinense phylogenetic analysis chloroplast genome |
| title | Characterization of the complete chloroplast genome of Ligusticum sinense, as a Chinese herb to treat toothache in China |
| title_full | Characterization of the complete chloroplast genome of Ligusticum sinense, as a Chinese herb to treat toothache in China |
| title_fullStr | Characterization of the complete chloroplast genome of Ligusticum sinense, as a Chinese herb to treat toothache in China |
| title_full_unstemmed | Characterization of the complete chloroplast genome of Ligusticum sinense, as a Chinese herb to treat toothache in China |
| title_short | Characterization of the complete chloroplast genome of Ligusticum sinense, as a Chinese herb to treat toothache in China |
| title_sort | characterization of the complete chloroplast genome of ligusticum sinense as a chinese herb to treat toothache in china |
| topic | ligusticum sinense phylogenetic analysis chloroplast genome |
| url | http://dx.doi.org/10.1080/23802359.2020.1808103 |
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