The Genomic and Transcriptomic Analyses of <i>Floccularia luteovirens</i>, a Rare Edible Fungus in the Qinghai–Tibet Plateau, Provide Insights into the Taxonomy Placement and Fruiting Body Formation
<i>Floccularia luteovirens</i> is a famous and precious edible mushroom (Huang Mogu) on the Qinghai–Tibet plateau that has a unique flavor and remarkable medical functions. Herein, we report a reference-grade 27 Mb genome of <i>F. luteovirens</i> containing 7068 protein-codin...
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| Format: | Article |
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MDPI AG
2021-10-01
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| Series: | Journal of Fungi |
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| Online Access: | https://www.mdpi.com/2309-608X/7/11/887 |
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| author | Zhengjie Liu Hongyun Lu Xinglin Zhang Qihe Chen |
| author_facet | Zhengjie Liu Hongyun Lu Xinglin Zhang Qihe Chen |
| author_sort | Zhengjie Liu |
| collection | DOAJ |
| description | <i>Floccularia luteovirens</i> is a famous and precious edible mushroom (Huang Mogu) on the Qinghai–Tibet plateau that has a unique flavor and remarkable medical functions. Herein, we report a reference-grade 27 Mb genome of <i>F. luteovirens</i> containing 7068 protein-coding genes. The genome component and gene functions were predicted. Genome ontology enrichment and pathway analyses indicated the potential production capacity for terpenoids, polyketides and polysaccharides. Moreover, 16 putative gene clusters and 145 genes coding for secondary metabolites were obtained, including guadinomine and melleolides. In addition, phylogenetic and comparative genomic analyses shed light on the precise classification of <i>F. luteovirens</i> suggesting that it belongs to the genus <i>Floccularia</i> instead of <i>Armillaria</i>. RNA-sequencing and comparative transcriptomic analysis revealed differentially expressed genes during four developmental stages of <i>F. luteovirens</i>, that of which helps to identify important genes regulating fruiting body formation for strain modification. This study will provide insight into artificial cultivation and increase the production of useful metabolites. |
| first_indexed | 2024-03-10T05:22:19Z |
| format | Article |
| id | doaj.art-0bc7e18e29094d80985fe88ce94f1013 |
| institution | Directory Open Access Journal |
| issn | 2309-608X |
| language | English |
| last_indexed | 2024-03-10T05:22:19Z |
| publishDate | 2021-10-01 |
| publisher | MDPI AG |
| record_format | Article |
| series | Journal of Fungi |
| spelling | doaj.art-0bc7e18e29094d80985fe88ce94f10132023-11-22T23:54:57ZengMDPI AGJournal of Fungi2309-608X2021-10-0171188710.3390/jof7110887The Genomic and Transcriptomic Analyses of <i>Floccularia luteovirens</i>, a Rare Edible Fungus in the Qinghai–Tibet Plateau, Provide Insights into the Taxonomy Placement and Fruiting Body FormationZhengjie Liu0Hongyun Lu1Xinglin Zhang2Qihe Chen3Department of Food Science and Nutrition, Zhejiang University, Hangzhou 310058, ChinaDepartment of Food Science and Nutrition, Zhejiang University, Hangzhou 310058, ChinaDepartment of Food Science and Nutrition, Zhejiang University, Hangzhou 310058, ChinaDepartment of Food Science and Nutrition, Zhejiang University, Hangzhou 310058, China<i>Floccularia luteovirens</i> is a famous and precious edible mushroom (Huang Mogu) on the Qinghai–Tibet plateau that has a unique flavor and remarkable medical functions. Herein, we report a reference-grade 27 Mb genome of <i>F. luteovirens</i> containing 7068 protein-coding genes. The genome component and gene functions were predicted. Genome ontology enrichment and pathway analyses indicated the potential production capacity for terpenoids, polyketides and polysaccharides. Moreover, 16 putative gene clusters and 145 genes coding for secondary metabolites were obtained, including guadinomine and melleolides. In addition, phylogenetic and comparative genomic analyses shed light on the precise classification of <i>F. luteovirens</i> suggesting that it belongs to the genus <i>Floccularia</i> instead of <i>Armillaria</i>. RNA-sequencing and comparative transcriptomic analysis revealed differentially expressed genes during four developmental stages of <i>F. luteovirens</i>, that of which helps to identify important genes regulating fruiting body formation for strain modification. This study will provide insight into artificial cultivation and increase the production of useful metabolites.https://www.mdpi.com/2309-608X/7/11/887biosynthesis gene clusters (BGCs)<i>Floccularia luteovirens</i>fruiting body formationgenomephylogeny |
| spellingShingle | Zhengjie Liu Hongyun Lu Xinglin Zhang Qihe Chen The Genomic and Transcriptomic Analyses of <i>Floccularia luteovirens</i>, a Rare Edible Fungus in the Qinghai–Tibet Plateau, Provide Insights into the Taxonomy Placement and Fruiting Body Formation Journal of Fungi biosynthesis gene clusters (BGCs) <i>Floccularia luteovirens</i> fruiting body formation genome phylogeny |
| title | The Genomic and Transcriptomic Analyses of <i>Floccularia luteovirens</i>, a Rare Edible Fungus in the Qinghai–Tibet Plateau, Provide Insights into the Taxonomy Placement and Fruiting Body Formation |
| title_full | The Genomic and Transcriptomic Analyses of <i>Floccularia luteovirens</i>, a Rare Edible Fungus in the Qinghai–Tibet Plateau, Provide Insights into the Taxonomy Placement and Fruiting Body Formation |
| title_fullStr | The Genomic and Transcriptomic Analyses of <i>Floccularia luteovirens</i>, a Rare Edible Fungus in the Qinghai–Tibet Plateau, Provide Insights into the Taxonomy Placement and Fruiting Body Formation |
| title_full_unstemmed | The Genomic and Transcriptomic Analyses of <i>Floccularia luteovirens</i>, a Rare Edible Fungus in the Qinghai–Tibet Plateau, Provide Insights into the Taxonomy Placement and Fruiting Body Formation |
| title_short | The Genomic and Transcriptomic Analyses of <i>Floccularia luteovirens</i>, a Rare Edible Fungus in the Qinghai–Tibet Plateau, Provide Insights into the Taxonomy Placement and Fruiting Body Formation |
| title_sort | genomic and transcriptomic analyses of i floccularia luteovirens i a rare edible fungus in the qinghai tibet plateau provide insights into the taxonomy placement and fruiting body formation |
| topic | biosynthesis gene clusters (BGCs) <i>Floccularia luteovirens</i> fruiting body formation genome phylogeny |
| url | https://www.mdpi.com/2309-608X/7/11/887 |
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