The complete chloroplast genome sequence of Aconitum tschangbaischanense (Ranunculaceae)
The perennial herbal medicine species Aconitum tschangbaischanense, is endemic to Changhai Mountain, Jilin province. In this study, we attempted to uncover the complete chloroplast (cp) genome of A. tschangbaischanense based on sequencing data using the Illumina sequencing technology. As per the res...
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Format: | Article |
Language: | English |
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Taylor & Francis Group
2023-06-01
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Series: | Mitochondrial DNA. Part B. Resources |
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Online Access: | http://dx.doi.org/10.1080/23802359.2023.2220435 |
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author | Xuelian Liu Junyi Zhu Mingge Jiang Shengchao Guan Liqiu Zhang Haiying Zhao |
author_facet | Xuelian Liu Junyi Zhu Mingge Jiang Shengchao Guan Liqiu Zhang Haiying Zhao |
author_sort | Xuelian Liu |
collection | DOAJ |
description | The perennial herbal medicine species Aconitum tschangbaischanense, is endemic to Changhai Mountain, Jilin province. In this study, we attempted to uncover the complete chloroplast (cp) genome of A. tschangbaischanense based on sequencing data using the Illumina sequencing technology. As per the results: (1) the length of its complete cp genome is 155,881 bp with a typical tetrad structure; (2) the structure of its cp genome contains large single-copy and small single-copy (LSC and SSC) regions of 86,351 and 16,9444 bp, respectively, isolated by two inverted repeat regions (IRs) of 26,293 bp; (3) we annotated a total 131 genes, consisting of 86 protein-coding genes, eight rRNA genes, and 37 tRNA genes. According to the maximum-likelihood phylogenetic tree based on complete cp genomes, A. tschangbaischanense, showed close association with A. carmichaelii, which belongs to clade I. Finally, this study provides the characteristics of the cp genome of A. tschangbaischanense, and its phylogenetic position. |
first_indexed | 2024-03-11T13:04:13Z |
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id | doaj.art-0c29b514ebf547a9a88a25f9e053d20f |
institution | Directory Open Access Journal |
issn | 2380-2359 |
language | English |
last_indexed | 2024-03-11T13:04:13Z |
publishDate | 2023-06-01 |
publisher | Taylor & Francis Group |
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series | Mitochondrial DNA. Part B. Resources |
spelling | doaj.art-0c29b514ebf547a9a88a25f9e053d20f2023-11-03T14:44:07ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592023-06-018665866210.1080/23802359.2023.22204352220435The complete chloroplast genome sequence of Aconitum tschangbaischanense (Ranunculaceae)Xuelian Liu0Junyi Zhu1Mingge Jiang2Shengchao Guan3Liqiu Zhang4Haiying Zhao5College of Life Science, Tonghua Normal UniversityCollege of Life Science, Tonghua Normal UniversityCollege of Life Science, Tonghua Normal UniversityCollege of Life Science, Tonghua Normal UniversityCollege of Medical, Tonghua Normal UniversityCollege of History and Geography, Tonghua Normal UniversityThe perennial herbal medicine species Aconitum tschangbaischanense, is endemic to Changhai Mountain, Jilin province. In this study, we attempted to uncover the complete chloroplast (cp) genome of A. tschangbaischanense based on sequencing data using the Illumina sequencing technology. As per the results: (1) the length of its complete cp genome is 155,881 bp with a typical tetrad structure; (2) the structure of its cp genome contains large single-copy and small single-copy (LSC and SSC) regions of 86,351 and 16,9444 bp, respectively, isolated by two inverted repeat regions (IRs) of 26,293 bp; (3) we annotated a total 131 genes, consisting of 86 protein-coding genes, eight rRNA genes, and 37 tRNA genes. According to the maximum-likelihood phylogenetic tree based on complete cp genomes, A. tschangbaischanense, showed close association with A. carmichaelii, which belongs to clade I. Finally, this study provides the characteristics of the cp genome of A. tschangbaischanense, and its phylogenetic position.http://dx.doi.org/10.1080/23802359.2023.2220435aconitum tschangbaischanense s. h. li & y. h. huang, 1975chloroplast genomeendangered species |
spellingShingle | Xuelian Liu Junyi Zhu Mingge Jiang Shengchao Guan Liqiu Zhang Haiying Zhao The complete chloroplast genome sequence of Aconitum tschangbaischanense (Ranunculaceae) Mitochondrial DNA. Part B. Resources aconitum tschangbaischanense s. h. li & y. h. huang, 1975 chloroplast genome endangered species |
title | The complete chloroplast genome sequence of Aconitum tschangbaischanense (Ranunculaceae) |
title_full | The complete chloroplast genome sequence of Aconitum tschangbaischanense (Ranunculaceae) |
title_fullStr | The complete chloroplast genome sequence of Aconitum tschangbaischanense (Ranunculaceae) |
title_full_unstemmed | The complete chloroplast genome sequence of Aconitum tschangbaischanense (Ranunculaceae) |
title_short | The complete chloroplast genome sequence of Aconitum tschangbaischanense (Ranunculaceae) |
title_sort | complete chloroplast genome sequence of aconitum tschangbaischanense ranunculaceae |
topic | aconitum tschangbaischanense s. h. li & y. h. huang, 1975 chloroplast genome endangered species |
url | http://dx.doi.org/10.1080/23802359.2023.2220435 |
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