The complete chloroplast genome of Agrimonia pilosa Ledeb. isolated in Korea (Rosaceae): investigation of intraspecific variations on its chloroplast genomes
The complete chloroplast genome of Agrimonia pilosa Ledeb. isolated in Korea is 155,125 bp long (GC ratio is 36.9%) and has four subregions: 84,458 bp of large single copy (34.9%) and 18,737 bp of small single copy (30.4%) regions are separated by 25,965 bp of inverted repeat (42.6%) regions includi...
| Main Authors: | , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2020-07-01
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| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2020.1772144 |
| _version_ | 1797639189137719296 |
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| author | Kyeong-In Heo Jongsun Park Hong Xi Juhyeon Min |
| author_facet | Kyeong-In Heo Jongsun Park Hong Xi Juhyeon Min |
| author_sort | Kyeong-In Heo |
| collection | DOAJ |
| description | The complete chloroplast genome of Agrimonia pilosa Ledeb. isolated in Korea is 155,125 bp long (GC ratio is 36.9%) and has four subregions: 84,458 bp of large single copy (34.9%) and 18,737 bp of small single copy (30.4%) regions are separated by 25,965 bp of inverted repeat (42.6%) regions including 129 genes (84 protein-coding genes, eight rRNAs, and 37 tRNAs). 258 SNPs and 542 INDELs were identified as intraspecific variations against the partial genome (KY419942). Phylogenetic trees show that our chloroplast genome was clustered with the previous A. pilosa chloroplast genome. |
| first_indexed | 2024-03-11T13:14:19Z |
| format | Article |
| id | doaj.art-0c6066edc9d64712a514118fdfd17948 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:14:19Z |
| publishDate | 2020-07-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-0c6066edc9d64712a514118fdfd179482023-11-03T13:50:22ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592020-07-01532264226610.1080/23802359.2020.17721441772144The complete chloroplast genome of Agrimonia pilosa Ledeb. isolated in Korea (Rosaceae): investigation of intraspecific variations on its chloroplast genomesKyeong-In Heo0Jongsun Park1Hong Xi2Juhyeon Min3InfoBoss IncInfoBoss IncInfoBoss IncInfoBoss IncThe complete chloroplast genome of Agrimonia pilosa Ledeb. isolated in Korea is 155,125 bp long (GC ratio is 36.9%) and has four subregions: 84,458 bp of large single copy (34.9%) and 18,737 bp of small single copy (30.4%) regions are separated by 25,965 bp of inverted repeat (42.6%) regions including 129 genes (84 protein-coding genes, eight rRNAs, and 37 tRNAs). 258 SNPs and 542 INDELs were identified as intraspecific variations against the partial genome (KY419942). Phylogenetic trees show that our chloroplast genome was clustered with the previous A. pilosa chloroplast genome.http://dx.doi.org/10.1080/23802359.2020.1772144agrimonia pilosasanguisorbeaechloroplast genomerosaceaeintraspecific variations |
| spellingShingle | Kyeong-In Heo Jongsun Park Hong Xi Juhyeon Min The complete chloroplast genome of Agrimonia pilosa Ledeb. isolated in Korea (Rosaceae): investigation of intraspecific variations on its chloroplast genomes Mitochondrial DNA. Part B. Resources agrimonia pilosa sanguisorbeae chloroplast genome rosaceae intraspecific variations |
| title | The complete chloroplast genome of Agrimonia pilosa Ledeb. isolated in Korea (Rosaceae): investigation of intraspecific variations on its chloroplast genomes |
| title_full | The complete chloroplast genome of Agrimonia pilosa Ledeb. isolated in Korea (Rosaceae): investigation of intraspecific variations on its chloroplast genomes |
| title_fullStr | The complete chloroplast genome of Agrimonia pilosa Ledeb. isolated in Korea (Rosaceae): investigation of intraspecific variations on its chloroplast genomes |
| title_full_unstemmed | The complete chloroplast genome of Agrimonia pilosa Ledeb. isolated in Korea (Rosaceae): investigation of intraspecific variations on its chloroplast genomes |
| title_short | The complete chloroplast genome of Agrimonia pilosa Ledeb. isolated in Korea (Rosaceae): investigation of intraspecific variations on its chloroplast genomes |
| title_sort | complete chloroplast genome of agrimonia pilosa ledeb isolated in korea rosaceae investigation of intraspecific variations on its chloroplast genomes |
| topic | agrimonia pilosa sanguisorbeae chloroplast genome rosaceae intraspecific variations |
| url | http://dx.doi.org/10.1080/23802359.2020.1772144 |
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