CHESS: a new human gene catalog curated from thousands of large-scale RNA sequencing experiments reveals extensive transcriptional noise
Abstract We assembled the sequences from deep RNA sequencing experiments by the Genotype-Tissue Expression (GTEx) project, to create a new catalog of human genes and transcripts, called CHESS. The new database contains 42,611 genes, of which 20,352 are potentially protein-coding and 22,259 are nonco...
Main Authors: | Mihaela Pertea, Alaina Shumate, Geo Pertea, Ales Varabyou, Florian P. Breitwieser, Yu-Chi Chang, Anil K. Madugundu, Akhilesh Pandey, Steven L. Salzberg |
---|---|
Format: | Article |
Language: | English |
Published: |
BMC
2018-11-01
|
Series: | Genome Biology |
Subjects: | |
Online Access: | http://link.springer.com/article/10.1186/s13059-018-1590-2 |
Similar Items
-
Analysis of genetically determined gene expression suggests role of inflammatory processes in exfoliation syndrome
by: Jibril B. Hirbo, et al.
Published: (2023-02-01) -
A tissue level atlas of the healthy human virome
by: Ryuichi Kumata, et al.
Published: (2020-06-01) -
Transcriptome assembly from long-read RNA-seq alignments with StringTie2
by: Sam Kovaka, et al.
Published: (2019-12-01) -
CHESS 3: an improved, comprehensive catalog of human genes and transcripts based on large-scale expression data, phylogenetic analysis, and protein structure
by: Ales Varabyou, et al.
Published: (2023-10-01) -
Improved transcriptome assembly using a hybrid of long and short reads with StringTie.
by: Alaina Shumate, et al.
Published: (2022-06-01)