The complete chloroplast genome of Castanea crenata Sieb. & Zucc
The complete chloroplast genome sequence of Castanea crenata was sequenced and assembled using PacBio Sequel data. The cpDNA was 160,787 bp in length, containing a pair of inverted repeats (IRs) of 25,654 bp each separated by a large and small single copy (LSC and SSC) regions of 90,645 bp and 18,83...
| Main Authors: | , , , , , , |
|---|---|
| Format: | Article |
| Language: | English |
| Published: |
Taylor & Francis Group
2019-07-01
|
| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2019.1687038 |
| _version_ | 1827773170818482176 |
|---|---|
| author | Min-Jeong Kang Tae-Dong Kim Sang-A Lee Hyo-Ryeon Lee Chulwoo Kim Hyoshin Lee Eung-Jun Park |
| author_facet | Min-Jeong Kang Tae-Dong Kim Sang-A Lee Hyo-Ryeon Lee Chulwoo Kim Hyoshin Lee Eung-Jun Park |
| author_sort | Min-Jeong Kang |
| collection | DOAJ |
| description | The complete chloroplast genome sequence of Castanea crenata was sequenced and assembled using PacBio Sequel data. The cpDNA was 160,787 bp in length, containing a pair of inverted repeats (IRs) of 25,654 bp each separated by a large and small single copy (LSC and SSC) regions of 90,645 bp and 18,836 bp, respectively. The cpDNA contained 102 genes, including 65 protein-coding genes, 8 ribosomal RNA genes and 37 transfer RNA genes. Phylogenetic analysis indicated that C. crenata was closest to C. pumila var. pumila, which is known as a typical variety of American chinquapin or dwarf chestnut. |
| first_indexed | 2024-03-11T13:19:10Z |
| format | Article |
| id | doaj.art-0da9a8d6573a411b97a10a68f96e0fed |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:19:10Z |
| publishDate | 2019-07-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-0da9a8d6573a411b97a10a68f96e0fed2023-11-03T10:38:51ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592019-07-01423864386510.1080/23802359.2019.16870381687038The complete chloroplast genome of Castanea crenata Sieb. & ZuccMin-Jeong Kang0Tae-Dong Kim1Sang-A Lee2Hyo-Ryeon Lee3Chulwoo Kim4Hyoshin Lee5Eung-Jun Park6National Institute of Forest ScienceNational Institute of Forest ScienceNational Institute of Forest ScienceNational Institute of Forest ScienceNational Institute of Forest ScienceNational Institute of Forest ScienceNational Institute of Forest ScienceThe complete chloroplast genome sequence of Castanea crenata was sequenced and assembled using PacBio Sequel data. The cpDNA was 160,787 bp in length, containing a pair of inverted repeats (IRs) of 25,654 bp each separated by a large and small single copy (LSC and SSC) regions of 90,645 bp and 18,836 bp, respectively. The cpDNA contained 102 genes, including 65 protein-coding genes, 8 ribosomal RNA genes and 37 transfer RNA genes. Phylogenetic analysis indicated that C. crenata was closest to C. pumila var. pumila, which is known as a typical variety of American chinquapin or dwarf chestnut.http://dx.doi.org/10.1080/23802359.2019.1687038castanea crenata sieb. & zucc.chloroplast genomephylogenetic analysis |
| spellingShingle | Min-Jeong Kang Tae-Dong Kim Sang-A Lee Hyo-Ryeon Lee Chulwoo Kim Hyoshin Lee Eung-Jun Park The complete chloroplast genome of Castanea crenata Sieb. & Zucc Mitochondrial DNA. Part B. Resources castanea crenata sieb. & zucc. chloroplast genome phylogenetic analysis |
| title | The complete chloroplast genome of Castanea crenata Sieb. & Zucc |
| title_full | The complete chloroplast genome of Castanea crenata Sieb. & Zucc |
| title_fullStr | The complete chloroplast genome of Castanea crenata Sieb. & Zucc |
| title_full_unstemmed | The complete chloroplast genome of Castanea crenata Sieb. & Zucc |
| title_short | The complete chloroplast genome of Castanea crenata Sieb. & Zucc |
| title_sort | complete chloroplast genome of castanea crenata sieb zucc |
| topic | castanea crenata sieb. & zucc. chloroplast genome phylogenetic analysis |
| url | http://dx.doi.org/10.1080/23802359.2019.1687038 |
| work_keys_str_mv | AT minjeongkang thecompletechloroplastgenomeofcastaneacrenatasiebzucc AT taedongkim thecompletechloroplastgenomeofcastaneacrenatasiebzucc AT sangalee thecompletechloroplastgenomeofcastaneacrenatasiebzucc AT hyoryeonlee thecompletechloroplastgenomeofcastaneacrenatasiebzucc AT chulwookim thecompletechloroplastgenomeofcastaneacrenatasiebzucc AT hyoshinlee thecompletechloroplastgenomeofcastaneacrenatasiebzucc AT eungjunpark thecompletechloroplastgenomeofcastaneacrenatasiebzucc AT minjeongkang completechloroplastgenomeofcastaneacrenatasiebzucc AT taedongkim completechloroplastgenomeofcastaneacrenatasiebzucc AT sangalee completechloroplastgenomeofcastaneacrenatasiebzucc AT hyoryeonlee completechloroplastgenomeofcastaneacrenatasiebzucc AT chulwookim completechloroplastgenomeofcastaneacrenatasiebzucc AT hyoshinlee completechloroplastgenomeofcastaneacrenatasiebzucc AT eungjunpark completechloroplastgenomeofcastaneacrenatasiebzucc |