Characterization of the complete mitochondrial genome of Golden cusk, Sirembo imberbis (Ophidiiformes:Ophidiidae)
The complete mitochondrial genome of Sirembo imberbis was determined by the bioinformatic assembly of the next generation sequencing (NGS) reads. Total length of the mitogenome was 16,717 bp, which harbors the conserved 13 protein-coding genes (PCGs), 2 ribosomal RNAs (12S and 16S), 22 tRNAs, and tw...
| Main Authors: | , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2020-10-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2020.1840942 |
| _version_ | 1797639049439084544 |
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| author | Nazia Tabassum Yeonghye Kim Hyun-Woo Kim |
| author_facet | Nazia Tabassum Yeonghye Kim Hyun-Woo Kim |
| author_sort | Nazia Tabassum |
| collection | DOAJ |
| description | The complete mitochondrial genome of Sirembo imberbis was determined by the bioinformatic assembly of the next generation sequencing (NGS) reads. Total length of the mitogenome was 16,717 bp, which harbors the conserved 13 protein-coding genes (PCGs), 2 ribosomal RNAs (12S and 16S), 22 tRNAs, and two non-coding region (the control region and the origin of light-strand replication). Among 13 protein-coding genes, unusual start codon (GTG) was exclusively identified in COX1, while the incomplete stop codons (TA- or T–) were detected in COX2, COX3, ND2, ND3, ND4 and CytB. As a result of phylogenetic tree, S. imberbis formed a cluster of the family Ophidiidae together with Bassozetus zenkevitchi and Lamprogrammus niger. |
| first_indexed | 2024-03-11T13:11:16Z |
| format | Article |
| id | doaj.art-0e0789ef6b6e4637ad22568f37a6ca67 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:11:16Z |
| publishDate | 2020-10-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-0e0789ef6b6e4637ad22568f37a6ca672023-11-03T14:08:16ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592020-10-01543815381610.1080/23802359.2020.18409421840942Characterization of the complete mitochondrial genome of Golden cusk, Sirembo imberbis (Ophidiiformes:Ophidiidae)Nazia Tabassum0Yeonghye Kim1Hyun-Woo Kim2Department of 4th Industrial Convergence Bionix Engineering, Pukyong National UniversityFisheries Resources Management Division, National Institute of FisheriesDepartment of Marine Biology, Pukyong National UniversityThe complete mitochondrial genome of Sirembo imberbis was determined by the bioinformatic assembly of the next generation sequencing (NGS) reads. Total length of the mitogenome was 16,717 bp, which harbors the conserved 13 protein-coding genes (PCGs), 2 ribosomal RNAs (12S and 16S), 22 tRNAs, and two non-coding region (the control region and the origin of light-strand replication). Among 13 protein-coding genes, unusual start codon (GTG) was exclusively identified in COX1, while the incomplete stop codons (TA- or T–) were detected in COX2, COX3, ND2, ND3, ND4 and CytB. As a result of phylogenetic tree, S. imberbis formed a cluster of the family Ophidiidae together with Bassozetus zenkevitchi and Lamprogrammus niger.http://dx.doi.org/10.1080/23802359.2020.1840942cusk eelngsophidiidaesirembo imberbismitochondrial genome |
| spellingShingle | Nazia Tabassum Yeonghye Kim Hyun-Woo Kim Characterization of the complete mitochondrial genome of Golden cusk, Sirembo imberbis (Ophidiiformes:Ophidiidae) Mitochondrial DNA. Part B. Resources cusk eel ngs ophidiidae sirembo imberbis mitochondrial genome |
| title | Characterization of the complete mitochondrial genome of Golden cusk, Sirembo imberbis (Ophidiiformes:Ophidiidae) |
| title_full | Characterization of the complete mitochondrial genome of Golden cusk, Sirembo imberbis (Ophidiiformes:Ophidiidae) |
| title_fullStr | Characterization of the complete mitochondrial genome of Golden cusk, Sirembo imberbis (Ophidiiformes:Ophidiidae) |
| title_full_unstemmed | Characterization of the complete mitochondrial genome of Golden cusk, Sirembo imberbis (Ophidiiformes:Ophidiidae) |
| title_short | Characterization of the complete mitochondrial genome of Golden cusk, Sirembo imberbis (Ophidiiformes:Ophidiidae) |
| title_sort | characterization of the complete mitochondrial genome of golden cusk sirembo imberbis ophidiiformes ophidiidae |
| topic | cusk eel ngs ophidiidae sirembo imberbis mitochondrial genome |
| url | http://dx.doi.org/10.1080/23802359.2020.1840942 |
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