Nematicidal action of Clonostachys rosea against Meloidogyne incognita: in-vitro and in-silico analyses
ABSTRACTClonostachys rosea is a biocontrol agent against a wide range of pests and diseases. In the present study, an in-vitro nematicidal activity of C. rosea has been documented by observing the behavioural response of Meloidogyne incognita (Mi) towards the culture filtrate of C. rosea. Eleven dif...
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2024-12-01
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| Series: | Journal of Taibah University for Science |
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| Online Access: | https://www.tandfonline.com/doi/10.1080/16583655.2023.2288723 |
| _version_ | 1797402372484366336 |
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| author | Gowrisri Nagaraj Rengasamy Kannan Thiruvengadam Raguchander Swarnakumari Narayanan Duraisamy Saravanakumar |
| author_facet | Gowrisri Nagaraj Rengasamy Kannan Thiruvengadam Raguchander Swarnakumari Narayanan Duraisamy Saravanakumar |
| author_sort | Gowrisri Nagaraj |
| collection | DOAJ |
| description | ABSTRACTClonostachys rosea is a biocontrol agent against a wide range of pests and diseases. In the present study, an in-vitro nematicidal activity of C. rosea has been documented by observing the behavioural response of Meloidogyne incognita (Mi) towards the culture filtrate of C. rosea. Eleven different biomolecules observed in GC-MS analysis were tested against seven potential target proteins of Mi through molecular modelling using PyRx 0.8 software. Among the biomolecules tested, Dihydro-4-hydroxy-2(3H)-furanone had the highest binding affinity for Acetylcholine esterase (AchE) (−7.5 kcal/mol), Cytochrome c oxidase subunit 1 (COX) (−7.8 kcal/mol), Heat shock protein (Hsp90) (−8.4 kcal/mol), Odorant response gene 1 (ODR 3) (−6.5 kcal/mol), Neuropeptide G-protein coupled receptor (nGPCR) (−7.6 kcal/mol) and Cathepsin L-protease (cpl-1) (−6.8 kcal/mol) protein targets compared to synthetic pesticide, carbofuran. The biomolecule 2,3-dihydroxypropanal has shown the highest binding affinity for Odorant response gene 1 (ODR 1) (−6.6 kcal/mol). Understanding the interactions between the target protein-ligands docked complexes displayed additional contacts such as hydrophobic interactions, van der Waals, pi-pi stacking, alkyl and pi-alkyl. The present investigation demonstrated that C. rosea is a hub of potential biomolecules that could be explored for nematicidal activities. |
| first_indexed | 2024-03-09T02:24:20Z |
| format | Article |
| id | doaj.art-0eb9c3b5b4bb4241923fd4f207402dab |
| institution | Directory Open Access Journal |
| issn | 1658-3655 |
| language | English |
| last_indexed | 2024-03-09T02:24:20Z |
| publishDate | 2024-12-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Journal of Taibah University for Science |
| spelling | doaj.art-0eb9c3b5b4bb4241923fd4f207402dab2023-12-06T16:14:19ZengTaylor & Francis GroupJournal of Taibah University for Science1658-36552024-12-0118110.1080/16583655.2023.2288723Nematicidal action of Clonostachys rosea against Meloidogyne incognita: in-vitro and in-silico analysesGowrisri Nagaraj0Rengasamy Kannan1Thiruvengadam Raguchander2Swarnakumari Narayanan3Duraisamy Saravanakumar4Department of Plant Pathology, Centre for Plant Protection Studies, Tamil Nadu Agricultural University, Coimbatore, IndiaDepartment of Plant Pathology, Centre for Plant Protection Studies, Tamil Nadu Agricultural University, Coimbatore, IndiaDepartment of Plant Pathology, Centre for Plant Protection Studies, Tamil Nadu Agricultural University, Coimbatore, IndiaDepartment of Nematology, Centre for Plant Protection Studies, Tamil Nadu Agricultural University, Coimbatore, IndiaDepartment of Food Production, Faculty of Food and Agriculture, The University of the West Indies, St Augustine Campus, TrinidadABSTRACTClonostachys rosea is a biocontrol agent against a wide range of pests and diseases. In the present study, an in-vitro nematicidal activity of C. rosea has been documented by observing the behavioural response of Meloidogyne incognita (Mi) towards the culture filtrate of C. rosea. Eleven different biomolecules observed in GC-MS analysis were tested against seven potential target proteins of Mi through molecular modelling using PyRx 0.8 software. Among the biomolecules tested, Dihydro-4-hydroxy-2(3H)-furanone had the highest binding affinity for Acetylcholine esterase (AchE) (−7.5 kcal/mol), Cytochrome c oxidase subunit 1 (COX) (−7.8 kcal/mol), Heat shock protein (Hsp90) (−8.4 kcal/mol), Odorant response gene 1 (ODR 3) (−6.5 kcal/mol), Neuropeptide G-protein coupled receptor (nGPCR) (−7.6 kcal/mol) and Cathepsin L-protease (cpl-1) (−6.8 kcal/mol) protein targets compared to synthetic pesticide, carbofuran. The biomolecule 2,3-dihydroxypropanal has shown the highest binding affinity for Odorant response gene 1 (ODR 1) (−6.6 kcal/mol). Understanding the interactions between the target protein-ligands docked complexes displayed additional contacts such as hydrophobic interactions, van der Waals, pi-pi stacking, alkyl and pi-alkyl. The present investigation demonstrated that C. rosea is a hub of potential biomolecules that could be explored for nematicidal activities.https://www.tandfonline.com/doi/10.1080/16583655.2023.2288723Clonostachys roseanematicideMeloidogyne incognitamolecular modelingdihydro-4-hydroxy-2(3H)-furanone2,3-dihydroxy propanal |
| spellingShingle | Gowrisri Nagaraj Rengasamy Kannan Thiruvengadam Raguchander Swarnakumari Narayanan Duraisamy Saravanakumar Nematicidal action of Clonostachys rosea against Meloidogyne incognita: in-vitro and in-silico analyses Journal of Taibah University for Science Clonostachys rosea nematicide Meloidogyne incognita molecular modeling dihydro-4-hydroxy-2(3H)-furanone 2,3-dihydroxy propanal |
| title | Nematicidal action of Clonostachys rosea against Meloidogyne incognita: in-vitro and in-silico analyses |
| title_full | Nematicidal action of Clonostachys rosea against Meloidogyne incognita: in-vitro and in-silico analyses |
| title_fullStr | Nematicidal action of Clonostachys rosea against Meloidogyne incognita: in-vitro and in-silico analyses |
| title_full_unstemmed | Nematicidal action of Clonostachys rosea against Meloidogyne incognita: in-vitro and in-silico analyses |
| title_short | Nematicidal action of Clonostachys rosea against Meloidogyne incognita: in-vitro and in-silico analyses |
| title_sort | nematicidal action of clonostachys rosea against meloidogyne incognita in vitro and in silico analyses |
| topic | Clonostachys rosea nematicide Meloidogyne incognita molecular modeling dihydro-4-hydroxy-2(3H)-furanone 2,3-dihydroxy propanal |
| url | https://www.tandfonline.com/doi/10.1080/16583655.2023.2288723 |
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