Development and Characterization of Microsatellite Markers from the Transcriptome of <i>Firmiana danxiaensis</i> (Malvaceae s.l.)

Premise of the study: <i>Firmiana</i> consists of 12–16 species, many of which are narrow endemics. Expressed sequence tag (EST)–simple sequence repeat (SSR) markers were developed and characterized for size polymorphism in four <i>Firmiana</i> species. Methods and Results:...

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Bibliographic Details
Main Authors: Qiang Fan, Sufang Chen, Mingwan Li, Shiyang He, Renchao Zhou, Wenbo Liao
Format: Article
Language:English
Published: Wiley 2013-11-01
Series:Applications in Plant Sciences
Subjects:
Online Access:http://www.bioone.org/doi/full/10.3732/apps.1300047
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Summary:Premise of the study: <i>Firmiana</i> consists of 12–16 species, many of which are narrow endemics. Expressed sequence tag (EST)–simple sequence repeat (SSR) markers were developed and characterized for size polymorphism in four <i>Firmiana</i> species. Methods and Results: A total of 102 EST-SSR primer pairs were designed based on the transcriptome sequences of <i>F. danxiaensis</i>; these were then characterized in four <i>Firmiana</i> species&#8212;<i>F. danxiaensis</i>, <i>F. kwangsiensis</i>, <i>F. hainanensis</i>, and <i>F. simplex</i>. In these four species, 17 primer pairs were successfully amplified, and 14 were polymorphic in at least one species. The number of alleles ranged from one to 13, and the observed and expected heterozygosities ranged from 0 to 1 and 0 to 0.925, respectively. The lowest level of polymorphism was observed in <i>F. danxiaensis</i>. Conclusions: These polymorphic EST-SSR markers are valuable for conservation genetics studies in the endangered <i>Firmiana</i> species.
ISSN:2168-0450