SNP-Seek II: A resource for allele mining and analysis of big genomic data in Oryza sativa

SNP-Seek II: A resource for allele mining and analysis of big genomic data in Oryza sativa

The 3000 Rice Genomes Project generated a large dataset of genomic variation to the world’s most important crop, Oryza sativa L. Using the Burrows-Wheeler Aligner (BWA) and the Genome Analysis Toolkit (GATK) variant calling on this dataset, we identified ∼40 M single-nucleotide polymorphisms (SNPs)....

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Bibliographic Details
Main Authors: Locedie Mansueto, Roven Rommel Fuentes, Dmytro Chebotarov, Frances Nikki Borja, Jeffrey Detras, Juan Miguel Abriol-Santos, Kevin Palis, Alexandre Poliakov, Inna Dubchak, Victor Solovyev, Ruaraidh Sackville Hamilton, Kenneth L. McNally, Nickolai Alexandrov, Ramil Mauleon
Format: Article
Language:English
Published: Elsevier 2016-11-01
Series:Current Plant Biology
Subjects:
Allele mining
Oryza
SNP
Indel
Genotype database
Genetic diversity
Online Access:http://www.sciencedirect.com/science/article/pii/S2214662816300780

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