Chloroplast genome of Trapa bispinosa Roxb. (Trapa, Lythraceae)
Trapa bispinosa Roxb. is an annual aquatic herb with great significance of medicinal, edible and economic value. Here, we reported the complete chloroplast genome sequence of Trapa bispinosa and conducted preliminary investigation of its phylogenetic relationship with other related species. As the r...
| Main Authors: | , , , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2021-02-01
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| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2020.1866457 |
| _version_ | 1797638986740531200 |
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| author | Lin Lin Jie Wang Yu-Xue Zhao Li Ma Cui-Hua Gu Zhi-Qiang Wu |
| author_facet | Lin Lin Jie Wang Yu-Xue Zhao Li Ma Cui-Hua Gu Zhi-Qiang Wu |
| author_sort | Lin Lin |
| collection | DOAJ |
| description | Trapa bispinosa Roxb. is an annual aquatic herb with great significance of medicinal, edible and economic value. Here, we reported the complete chloroplast genome sequence of Trapa bispinosa and conducted preliminary investigation of its phylogenetic relationship with other related species. As the result showed, the whole chloroplast genome size was 155,556 bp consisting of four adjoining regions, i.e., a large/small single copy (LSC, 88,506 bp/SSC, 18,274 bp) region and two inverted repeat (IRs, 24,388 bp) regions. Among 112 identified unique genes were 78 protein coding genes, 30 transfer RNA (tRNA) genes, and four ribosomal RNA (rRNA) genes. Trapa spp. were precisely clustered as a monophyly, and simultaneously, the closest relation between Trapa bispinosa and Trapa natans were strongly supported in the maximum likelihood analysis. |
| first_indexed | 2024-03-11T13:11:17Z |
| format | Article |
| id | doaj.art-0f4daba26b844046876e6e080c79363c |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:11:17Z |
| publishDate | 2021-02-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-0f4daba26b844046876e6e080c79363c2023-11-03T14:08:18ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592021-02-016233333410.1080/23802359.2020.18664571866457Chloroplast genome of Trapa bispinosa Roxb. (Trapa, Lythraceae)Lin Lin0Jie Wang1Yu-Xue Zhao2Li Ma3Cui-Hua Gu4Zhi-Qiang Wu5School of Landscape and Architecture, Zhejiang A & F UniversitySchool of Landscape and Architecture, Zhejiang A & F UniversityCollege of Forestry and Biotechnology, Zhejiang A & F UniversitySchool of Landscape and Architecture, Zhejiang A & F UniversitySchool of Landscape and Architecture, Zhejiang A & F UniversityShenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural SciencesTrapa bispinosa Roxb. is an annual aquatic herb with great significance of medicinal, edible and economic value. Here, we reported the complete chloroplast genome sequence of Trapa bispinosa and conducted preliminary investigation of its phylogenetic relationship with other related species. As the result showed, the whole chloroplast genome size was 155,556 bp consisting of four adjoining regions, i.e., a large/small single copy (LSC, 88,506 bp/SSC, 18,274 bp) region and two inverted repeat (IRs, 24,388 bp) regions. Among 112 identified unique genes were 78 protein coding genes, 30 transfer RNA (tRNA) genes, and four ribosomal RNA (rRNA) genes. Trapa spp. were precisely clustered as a monophyly, and simultaneously, the closest relation between Trapa bispinosa and Trapa natans were strongly supported in the maximum likelihood analysis.http://dx.doi.org/10.1080/23802359.2020.1866457trapa bispinosacomplete chloroplast genome sequencephylogenetic analysis |
| spellingShingle | Lin Lin Jie Wang Yu-Xue Zhao Li Ma Cui-Hua Gu Zhi-Qiang Wu Chloroplast genome of Trapa bispinosa Roxb. (Trapa, Lythraceae) Mitochondrial DNA. Part B. Resources trapa bispinosa complete chloroplast genome sequence phylogenetic analysis |
| title | Chloroplast genome of Trapa bispinosa Roxb. (Trapa, Lythraceae) |
| title_full | Chloroplast genome of Trapa bispinosa Roxb. (Trapa, Lythraceae) |
| title_fullStr | Chloroplast genome of Trapa bispinosa Roxb. (Trapa, Lythraceae) |
| title_full_unstemmed | Chloroplast genome of Trapa bispinosa Roxb. (Trapa, Lythraceae) |
| title_short | Chloroplast genome of Trapa bispinosa Roxb. (Trapa, Lythraceae) |
| title_sort | chloroplast genome of trapa bispinosa roxb trapa lythraceae |
| topic | trapa bispinosa complete chloroplast genome sequence phylogenetic analysis |
| url | http://dx.doi.org/10.1080/23802359.2020.1866457 |
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