TrEMOLO: accurate transposable element allele frequency estimation using long-read sequencing data combining assembly and mapping-based approaches

TrEMOLO: accurate transposable element allele frequency estimation using long-read sequencing data combining assembly and mapping-based approaches

Abstract Transposable Element MOnitoring with LOng-reads (TrEMOLO) is a new software that combines assembly- and mapping-based approaches to robustly detect genetic elements called transposable elements (TEs). Using high- or low-quality genome assemblies, TrEMOLO can detect most TE insertions and de...

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Bibliographic Details
Main Authors: Mourdas Mohamed, François Sabot, Marion Varoqui, Bruno Mugat, Katell Audouin, Alain Pélisson, Anna-Sophie Fiston-Lavier, Séverine Chambeyron
Format: Article
Language:English
Published: BMC 2023-04-01
Series:Genome Biology
Subjects:
Genome
Software
Transposable element calling
Long-read DNA sequencing
Nanopore sequencing
Transposable element allelic frequency
Online Access:https://doi.org/10.1186/s13059-023-02911-2

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