Characterization of the complete chloroplast genome of Sophora tonkinensis Gagnep.
In this study, the complete chloroplast (cp) genome of Sophora tonkinensis Gagnep. was determined through Illumina sequencing method. The complete chloroplast genome of S. tonkinensis was 155,640 bp in length and contained a pair of IR regions (25,925 bp) separated by a small single copy region (18,...
| Main Authors: | , , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2019-01-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2019.1622466 |
| _version_ | 1797639789017563136 |
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| author | Wenlong Zhang Liping Liu Jianke Wang Li Li Guohong Li |
| author_facet | Wenlong Zhang Liping Liu Jianke Wang Li Li Guohong Li |
| author_sort | Wenlong Zhang |
| collection | DOAJ |
| description | In this study, the complete chloroplast (cp) genome of Sophora tonkinensis Gagnep. was determined through Illumina sequencing method. The complete chloroplast genome of S. tonkinensis was 155,640 bp in length and contained a pair of IR regions (25,925 bp) separated by a small single copy region (18,205 bp) and a large single copy region (85,585 bp). The cp genome of S. tonkinensis encoded 127 genes including 84 protein-coding genes, 35 tRNA genes, and 8 ribosomal RNA genes. The overall GC content of S. tonkinensis cp genome is 36.4%. By phylogenetic analysis using the maximum-likelihood (ML) method, S. tonkinensis showed the closest relationship with Sophora flavescens. |
| first_indexed | 2024-03-11T13:22:08Z |
| format | Article |
| id | doaj.art-1014d6caa25c4093b7018b96f7685d51 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:22:08Z |
| publishDate | 2019-01-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-1014d6caa25c4093b7018b96f7685d512023-11-03T10:06:47ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592019-01-014146046210.1080/23802359.2019.16224661622466Characterization of the complete chloroplast genome of Sophora tonkinensis Gagnep.Wenlong Zhang0Liping Liu1Jianke Wang2Li Li3Guohong Li4Guizhou University of Traditional Chinese MedicineGuizhou Polytechnic College of CommunicationsGuizhou University of Traditional Chinese MedicineGuizhou Normal UniversityGuizhou Normal UniversityIn this study, the complete chloroplast (cp) genome of Sophora tonkinensis Gagnep. was determined through Illumina sequencing method. The complete chloroplast genome of S. tonkinensis was 155,640 bp in length and contained a pair of IR regions (25,925 bp) separated by a small single copy region (18,205 bp) and a large single copy region (85,585 bp). The cp genome of S. tonkinensis encoded 127 genes including 84 protein-coding genes, 35 tRNA genes, and 8 ribosomal RNA genes. The overall GC content of S. tonkinensis cp genome is 36.4%. By phylogenetic analysis using the maximum-likelihood (ML) method, S. tonkinensis showed the closest relationship with Sophora flavescens.http://dx.doi.org/10.1080/23802359.2019.1622466sophora tonkinensisshan dou genchloroplast genomephylogenetic analysis |
| spellingShingle | Wenlong Zhang Liping Liu Jianke Wang Li Li Guohong Li Characterization of the complete chloroplast genome of Sophora tonkinensis Gagnep. Mitochondrial DNA. Part B. Resources sophora tonkinensis shan dou gen chloroplast genome phylogenetic analysis |
| title | Characterization of the complete chloroplast genome of Sophora tonkinensis Gagnep. |
| title_full | Characterization of the complete chloroplast genome of Sophora tonkinensis Gagnep. |
| title_fullStr | Characterization of the complete chloroplast genome of Sophora tonkinensis Gagnep. |
| title_full_unstemmed | Characterization of the complete chloroplast genome of Sophora tonkinensis Gagnep. |
| title_short | Characterization of the complete chloroplast genome of Sophora tonkinensis Gagnep. |
| title_sort | characterization of the complete chloroplast genome of sophora tonkinensis gagnep |
| topic | sophora tonkinensis shan dou gen chloroplast genome phylogenetic analysis |
| url | http://dx.doi.org/10.1080/23802359.2019.1622466 |
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