Characterization of the complete plastid genome of Fragilariopsis cylindrus
In this study, the complete plastid genome of Fragilariopsis cylindrus was recovered through Illumina sequencing data. This complete plastid genome of F. cylindrus was 123,275 bp in length and contained a pair of IR regions (13,063 bp). It encoded 141 genes including 104 protein-coding genes, 30 tRN...
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2019-01-01
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| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2019.1586475 |
| _version_ | 1797639901948149760 |
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| author | Zhou Zheng Hao Chen Ning Du |
| author_facet | Zhou Zheng Hao Chen Ning Du |
| author_sort | Zhou Zheng |
| collection | DOAJ |
| description | In this study, the complete plastid genome of Fragilariopsis cylindrus was recovered through Illumina sequencing data. This complete plastid genome of F. cylindrus was 123,275 bp in length and contained a pair of IR regions (13,063 bp). It encoded 141 genes including 104 protein-coding genes, 30 tRNA genes, one tmRNA, and six ribosomal RNA genes in IR regions. The overall GC content of F. cylindrus pt genome is 30.8%. By phylogenetic analysis, using whole genome alignments through NJ method, F. cylindrus exhibited the closest relationship with Pseudo-nitzschia multiseries. |
| first_indexed | 2024-03-11T13:23:10Z |
| format | Article |
| id | doaj.art-108f8dd8e78d43febd2cb6ed917d26fd |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:23:10Z |
| publishDate | 2019-01-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-108f8dd8e78d43febd2cb6ed917d26fd2023-11-03T10:06:42ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592019-01-01411138113910.1080/23802359.2019.15864751586475Characterization of the complete plastid genome of Fragilariopsis cylindrusZhou Zheng0Hao Chen1Ning Du2First Institute of OceanographyQingdao UniversityFirst Institute of OceanographyIn this study, the complete plastid genome of Fragilariopsis cylindrus was recovered through Illumina sequencing data. This complete plastid genome of F. cylindrus was 123,275 bp in length and contained a pair of IR regions (13,063 bp). It encoded 141 genes including 104 protein-coding genes, 30 tRNA genes, one tmRNA, and six ribosomal RNA genes in IR regions. The overall GC content of F. cylindrus pt genome is 30.8%. By phylogenetic analysis, using whole genome alignments through NJ method, F. cylindrus exhibited the closest relationship with Pseudo-nitzschia multiseries.http://dx.doi.org/10.1080/23802359.2019.1586475fragilariopsis cylindrusplastid genomeassembly |
| spellingShingle | Zhou Zheng Hao Chen Ning Du Characterization of the complete plastid genome of Fragilariopsis cylindrus Mitochondrial DNA. Part B. Resources fragilariopsis cylindrus plastid genome assembly |
| title | Characterization of the complete plastid genome of Fragilariopsis cylindrus |
| title_full | Characterization of the complete plastid genome of Fragilariopsis cylindrus |
| title_fullStr | Characterization of the complete plastid genome of Fragilariopsis cylindrus |
| title_full_unstemmed | Characterization of the complete plastid genome of Fragilariopsis cylindrus |
| title_short | Characterization of the complete plastid genome of Fragilariopsis cylindrus |
| title_sort | characterization of the complete plastid genome of fragilariopsis cylindrus |
| topic | fragilariopsis cylindrus plastid genome assembly |
| url | http://dx.doi.org/10.1080/23802359.2019.1586475 |
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