Predicting nucleosome positioning using statistical equilibrium models in budding yeast

Predicting nucleosome positioning using statistical equilibrium models in budding yeast

Summary: We present a protocol using thermodynamic models to predict nucleosome positioning with transcription factors (TFs) and chromatin remodelers. We describe step-by-step approaches to annotate genome-wide nucleosome-depleted regions (NDRs), compute nucleosome and TF occupancy, optimize paramet...

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Bibliographic Details
Main Authors: Hungyo Kharerin, Lu Bai
Format: Article
Language:English
Published: Elsevier 2023-03-01
Series:STAR Protocols
Subjects:
Bioinformatics
Biophysics
Genomics
Model Organisms
Molecular Biology
Computer sciences
Online Access:http://www.sciencedirect.com/science/article/pii/S2666166722008061

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http://www.sciencedirect.com/science/article/pii/S2666166722008061

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