Characterization of the complete chloroplast genome of Magnolia odoratissima (Magnoliaceae), an endangered and endemic species in China
Magnolia odoratissima Law et R. Z. Zhou only produced in Yunnan Province of China. The species with extremely small populations and critically endangered, and now is affirmed as the second most important protection of wild plants in China. In this study, the complete chloroplast genome (cp) of M. od...
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2019-01-01
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| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2018.1547134 |
| _version_ | 1797640521995255808 |
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| author | Shui-Lian He Hong-Zhi Wu Yang Yang |
| author_facet | Shui-Lian He Hong-Zhi Wu Yang Yang |
| author_sort | Shui-Lian He |
| collection | DOAJ |
| description | Magnolia odoratissima Law et R. Z. Zhou only produced in Yunnan Province of China. The species with extremely small populations and critically endangered, and now is affirmed as the second most important protection of wild plants in China. In this study, the complete chloroplast genome (cp) of M. odoratissima was sequenced, assembled and analyzed. Our results indicated that the cp genome of M. odoratissima was 159,536 bp in length, containing a large single copy (LSC, 87,688 bp) region and a small single copy (SSC, 18,764 bp) region separated by two reduced inverted repeats (IRs, 26,543 bp). A total of 114 unique genes were identified, including 80 protein-coding genes, 30 transfer RNA (tRNA) genes and 4 ribosomal RNA (rRNA) genes. The overall GC content of M. odoratissima cp genome was 39.3%. Most of the 88 simple sequence repeats (SSRs) were mononucleotides motifs of A/T types and were found to be located in non-coding regions. Phylogenetic analysis of M. odoratissima showed that M. odoratissima was the base group of genus Magnolia with strongly bootstrap supported. |
| first_indexed | 2024-03-11T13:33:07Z |
| format | Article |
| id | doaj.art-132ce1439826447b8b72a64ad8697ba1 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:33:07Z |
| publishDate | 2019-01-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-132ce1439826447b8b72a64ad8697ba12023-11-02T16:07:24ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592019-01-014138638810.1080/23802359.2018.15471341547134Characterization of the complete chloroplast genome of Magnolia odoratissima (Magnoliaceae), an endangered and endemic species in ChinaShui-Lian He0Hong-Zhi Wu1Yang Yang2Yunnan Agricultural UniversityYunnan Agricultural UniversityYunnan Agricultural UniversityMagnolia odoratissima Law et R. Z. Zhou only produced in Yunnan Province of China. The species with extremely small populations and critically endangered, and now is affirmed as the second most important protection of wild plants in China. In this study, the complete chloroplast genome (cp) of M. odoratissima was sequenced, assembled and analyzed. Our results indicated that the cp genome of M. odoratissima was 159,536 bp in length, containing a large single copy (LSC, 87,688 bp) region and a small single copy (SSC, 18,764 bp) region separated by two reduced inverted repeats (IRs, 26,543 bp). A total of 114 unique genes were identified, including 80 protein-coding genes, 30 transfer RNA (tRNA) genes and 4 ribosomal RNA (rRNA) genes. The overall GC content of M. odoratissima cp genome was 39.3%. Most of the 88 simple sequence repeats (SSRs) were mononucleotides motifs of A/T types and were found to be located in non-coding regions. Phylogenetic analysis of M. odoratissima showed that M. odoratissima was the base group of genus Magnolia with strongly bootstrap supported.http://dx.doi.org/10.1080/23802359.2018.1547134m. odoratissimaendangered specieschloroplast genomessrphylogeny |
| spellingShingle | Shui-Lian He Hong-Zhi Wu Yang Yang Characterization of the complete chloroplast genome of Magnolia odoratissima (Magnoliaceae), an endangered and endemic species in China Mitochondrial DNA. Part B. Resources m. odoratissima endangered species chloroplast genome ssr phylogeny |
| title | Characterization of the complete chloroplast genome of Magnolia odoratissima (Magnoliaceae), an endangered and endemic species in China |
| title_full | Characterization of the complete chloroplast genome of Magnolia odoratissima (Magnoliaceae), an endangered and endemic species in China |
| title_fullStr | Characterization of the complete chloroplast genome of Magnolia odoratissima (Magnoliaceae), an endangered and endemic species in China |
| title_full_unstemmed | Characterization of the complete chloroplast genome of Magnolia odoratissima (Magnoliaceae), an endangered and endemic species in China |
| title_short | Characterization of the complete chloroplast genome of Magnolia odoratissima (Magnoliaceae), an endangered and endemic species in China |
| title_sort | characterization of the complete chloroplast genome of magnolia odoratissima magnoliaceae an endangered and endemic species in china |
| topic | m. odoratissima endangered species chloroplast genome ssr phylogeny |
| url | http://dx.doi.org/10.1080/23802359.2018.1547134 |
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