The complete chloroplast genome of Abies ernestii Rehder (Pinaceae) and its phylogenetic implications
Abies ernestii Rehder is endemic to the montane regions of Southwest China. Till now, phylogenetic relationships between A. ernestii and other closely related species remain unclear. In this study, we first characterized the complete chloroplast (cp) genome of A. ernestii. The whole cp genome was 12...
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Format: | Article |
Language: | English |
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Taylor & Francis Group
2022-08-01
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Series: | Mitochondrial DNA. Part B. Resources |
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Online Access: | http://dx.doi.org/10.1080/23802359.2022.2109435 |
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author | Yi-Zhen Shao Zhi-Yuan Shi Zhao Wang Wei Wang Yun Chen Qian Wen |
author_facet | Yi-Zhen Shao Zhi-Yuan Shi Zhao Wang Wei Wang Yun Chen Qian Wen |
author_sort | Yi-Zhen Shao |
collection | DOAJ |
description | Abies ernestii Rehder is endemic to the montane regions of Southwest China. Till now, phylogenetic relationships between A. ernestii and other closely related species remain unclear. In this study, we first characterized the complete chloroplast (cp) genome of A. ernestii. The whole cp genome was 121,841 bp in size, including one hundred and thirteen genes. Results of comparative cp genome revealed that only ycf1 and ycf2 was characterized by a considerable variation. Our phylogenetic analyses supported the monophyly of the genus Abies and revealed a clear separation between A. ernestii and A. chensiensis Tiegh. This study highlights the significance of using cp genomes to examine species boundaries among closely related fir species. |
first_indexed | 2024-03-11T13:04:15Z |
format | Article |
id | doaj.art-13f8d50e75184996a0269dee33e2be3f |
institution | Directory Open Access Journal |
issn | 2380-2359 |
language | English |
last_indexed | 2024-03-11T13:04:15Z |
publishDate | 2022-08-01 |
publisher | Taylor & Francis Group |
record_format | Article |
series | Mitochondrial DNA. Part B. Resources |
spelling | doaj.art-13f8d50e75184996a0269dee33e2be3f2023-11-03T14:44:04ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592022-08-01781497150310.1080/23802359.2022.21094352109435The complete chloroplast genome of Abies ernestii Rehder (Pinaceae) and its phylogenetic implicationsYi-Zhen Shao0Zhi-Yuan Shi1Zhao Wang2Wei Wang3Yun Chen4Qian Wen5College of Life Sciences, Henan Agriculture UniversityCollege of Life Sciences, Henan Agriculture UniversityCollege of Life Sciences, Henan Agriculture UniversityCollege of Life Sciences, Henan Agriculture UniversityCollege of Life Sciences, Henan Agriculture UniversityCollege of Resources and Environmental Sciences, Henan Agriculture UniversityAbies ernestii Rehder is endemic to the montane regions of Southwest China. Till now, phylogenetic relationships between A. ernestii and other closely related species remain unclear. In this study, we first characterized the complete chloroplast (cp) genome of A. ernestii. The whole cp genome was 121,841 bp in size, including one hundred and thirteen genes. Results of comparative cp genome revealed that only ycf1 and ycf2 was characterized by a considerable variation. Our phylogenetic analyses supported the monophyly of the genus Abies and revealed a clear separation between A. ernestii and A. chensiensis Tiegh. This study highlights the significance of using cp genomes to examine species boundaries among closely related fir species.http://dx.doi.org/10.1080/23802359.2022.2109435abies ernestiichloroplast genomessr analysiscomparative genome analysisphylogenetic analyses |
spellingShingle | Yi-Zhen Shao Zhi-Yuan Shi Zhao Wang Wei Wang Yun Chen Qian Wen The complete chloroplast genome of Abies ernestii Rehder (Pinaceae) and its phylogenetic implications Mitochondrial DNA. Part B. Resources abies ernestii chloroplast genome ssr analysis comparative genome analysis phylogenetic analyses |
title | The complete chloroplast genome of Abies ernestii Rehder (Pinaceae) and its phylogenetic implications |
title_full | The complete chloroplast genome of Abies ernestii Rehder (Pinaceae) and its phylogenetic implications |
title_fullStr | The complete chloroplast genome of Abies ernestii Rehder (Pinaceae) and its phylogenetic implications |
title_full_unstemmed | The complete chloroplast genome of Abies ernestii Rehder (Pinaceae) and its phylogenetic implications |
title_short | The complete chloroplast genome of Abies ernestii Rehder (Pinaceae) and its phylogenetic implications |
title_sort | complete chloroplast genome of abies ernestii rehder pinaceae and its phylogenetic implications |
topic | abies ernestii chloroplast genome ssr analysis comparative genome analysis phylogenetic analyses |
url | http://dx.doi.org/10.1080/23802359.2022.2109435 |
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