The complete chloroplast genome of Abies ernestii Rehder (Pinaceae) and its phylogenetic implications

Abies ernestii Rehder is endemic to the montane regions of Southwest China. Till now, phylogenetic relationships between A. ernestii and other closely related species remain unclear. In this study, we first characterized the complete chloroplast (cp) genome of A. ernestii. The whole cp genome was 12...

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Main Authors: Yi-Zhen Shao, Zhi-Yuan Shi, Zhao Wang, Wei Wang, Yun Chen, Qian Wen
Format: Article
Language:English
Published: Taylor & Francis Group 2022-08-01
Series:Mitochondrial DNA. Part B. Resources
Subjects:
Online Access:http://dx.doi.org/10.1080/23802359.2022.2109435
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author Yi-Zhen Shao
Zhi-Yuan Shi
Zhao Wang
Wei Wang
Yun Chen
Qian Wen
author_facet Yi-Zhen Shao
Zhi-Yuan Shi
Zhao Wang
Wei Wang
Yun Chen
Qian Wen
author_sort Yi-Zhen Shao
collection DOAJ
description Abies ernestii Rehder is endemic to the montane regions of Southwest China. Till now, phylogenetic relationships between A. ernestii and other closely related species remain unclear. In this study, we first characterized the complete chloroplast (cp) genome of A. ernestii. The whole cp genome was 121,841 bp in size, including one hundred and thirteen genes. Results of comparative cp genome revealed that only ycf1 and ycf2 was characterized by a considerable variation. Our phylogenetic analyses supported the monophyly of the genus Abies and revealed a clear separation between A. ernestii and A. chensiensis Tiegh. This study highlights the significance of using cp genomes to examine species boundaries among closely related fir species.
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spelling doaj.art-13f8d50e75184996a0269dee33e2be3f2023-11-03T14:44:04ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592022-08-01781497150310.1080/23802359.2022.21094352109435The complete chloroplast genome of Abies ernestii Rehder (Pinaceae) and its phylogenetic implicationsYi-Zhen Shao0Zhi-Yuan Shi1Zhao Wang2Wei Wang3Yun Chen4Qian Wen5College of Life Sciences, Henan Agriculture UniversityCollege of Life Sciences, Henan Agriculture UniversityCollege of Life Sciences, Henan Agriculture UniversityCollege of Life Sciences, Henan Agriculture UniversityCollege of Life Sciences, Henan Agriculture UniversityCollege of Resources and Environmental Sciences, Henan Agriculture UniversityAbies ernestii Rehder is endemic to the montane regions of Southwest China. Till now, phylogenetic relationships between A. ernestii and other closely related species remain unclear. In this study, we first characterized the complete chloroplast (cp) genome of A. ernestii. The whole cp genome was 121,841 bp in size, including one hundred and thirteen genes. Results of comparative cp genome revealed that only ycf1 and ycf2 was characterized by a considerable variation. Our phylogenetic analyses supported the monophyly of the genus Abies and revealed a clear separation between A. ernestii and A. chensiensis Tiegh. This study highlights the significance of using cp genomes to examine species boundaries among closely related fir species.http://dx.doi.org/10.1080/23802359.2022.2109435abies ernestiichloroplast genomessr analysiscomparative genome analysisphylogenetic analyses
spellingShingle Yi-Zhen Shao
Zhi-Yuan Shi
Zhao Wang
Wei Wang
Yun Chen
Qian Wen
The complete chloroplast genome of Abies ernestii Rehder (Pinaceae) and its phylogenetic implications
Mitochondrial DNA. Part B. Resources
abies ernestii
chloroplast genome
ssr analysis
comparative genome analysis
phylogenetic analyses
title The complete chloroplast genome of Abies ernestii Rehder (Pinaceae) and its phylogenetic implications
title_full The complete chloroplast genome of Abies ernestii Rehder (Pinaceae) and its phylogenetic implications
title_fullStr The complete chloroplast genome of Abies ernestii Rehder (Pinaceae) and its phylogenetic implications
title_full_unstemmed The complete chloroplast genome of Abies ernestii Rehder (Pinaceae) and its phylogenetic implications
title_short The complete chloroplast genome of Abies ernestii Rehder (Pinaceae) and its phylogenetic implications
title_sort complete chloroplast genome of abies ernestii rehder pinaceae and its phylogenetic implications
topic abies ernestii
chloroplast genome
ssr analysis
comparative genome analysis
phylogenetic analyses
url http://dx.doi.org/10.1080/23802359.2022.2109435
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