Insights into lignocellulose degradation: comparative genomics of anaerobic and cellulolytic Ruminiclostridium-type species

Insights into lignocellulose degradation: comparative genomics of anaerobic and cellulolytic Ruminiclostridium-type species

Mesophilic, anaerobic, and cellulolytic Ruminiclostridium-type bacterial species can secrete an extracellular, multi-enzyme machinery cellulosome, which efficiently degrades cellulose. In this study, we first reported the complete genome of Ruminiclostridium papyrosolvens DSM2782, a single circular...

Full description

Bibliographic Details
Main Authors:	Mengcheng You, Qiuyun Zhao, Yuansheng Liu, Wenhao Zhang, Zhewei Shen, Zhenxing Ren, Chenggang Xu
Format:	Article
Language:	English
Published:	Frontiers Media S.A. 2023-11-01
Series:	Frontiers in Microbiology
Subjects:	Ruminiclostridium papyrosolvens comparative genomics pan-genome CAZymes cellulosome
Online Access:	https://www.frontiersin.org/articles/10.3389/fmicb.2023.1288286/full

Similar Items

Secretomic analyses of Ruminiclostridium papyrosolvens reveal its enzymatic basis for lignocellulose degradation
by: Zhenxing Ren, et al.
Published: (2019-07-01)

Characterization of D-Allulose-3-Epimerase From Ruminiclostridium papyrosolvens and Immobilization Within Metal-Organic Frameworks
by: Jiaming Yang, et al.
Published: (2022-04-01)

Stem-loop structures control mRNA processing of the cellulosomal cip-cel operon in Ruminiclostridium cellulolyticum
by: Na Wang, et al.
Published: (2023-06-01)

Internal Transcription Terminators Control Stoichiometry of ABC Transporters in Cellulolytic Clostridia
by: Shasha Wu, et al.
Published: (2022-04-01)

Comparative genomics reveals cellobiose hydrolysis mechanism of Ruminiclostridium thermocellum M3, a cellulosic saccharification bacterium
by: Sheng Tao, et al.
Published: (2023-01-01)

Co-elicitation of lignocelluloytic enzymatic activities and metabolites production in an Aspergillus-Streptomyces co-culture during lignocellulose fractionation
by: Julian Detain, et al.
Published: (2022-01-01)

Handling Several Sugars at a Time: a Case Study of Xyloglucan Utilization by Ruminiclostridium cellulolyticum
by: Clara Kampik, et al.
Published: (2021-12-01)

Comparative Genomics Uncovers the Genetic Diversity and Synthetic Biology of Secondary Metabolite Production of Trametes
by: Yan Zhang, et al.
Published: (2020-03-01)

De Novo Long-Read Whole-Genome Assemblies and the Comparative Pan-Genome Analysis of Ascochyta Blight Pathogens Affecting Field Pea
by: Yvonne O. Ogaji, et al.
Published: (2022-08-01)

Hybrid Assembly Improves Genome Quality and Completeness of <i>Trametes villosa</i> CCMB561 and Reveals a Huge Potential for Lignocellulose Breakdown
by: Luiz Marcelo Ribeiro Tomé, et al.
Published: (2022-01-01)

Comparative Genomics Uncovers the Genetic Diversity and Characters of Veillonella atypica and Provides Insights Into Its Potential Applications
by: Maozhen Han, et al.
Published: (2020-06-01)

Genomic sequence analysis reveals diversity of Australian Xanthomonas species associated with bacterial leaf spot of tomato, capsicum and chilli
by: R. Roach, et al.
Published: (2019-04-01)

Multi-omics analysis provides insights into lignocellulosic biomass degradation by Laetiporus sulphureus ATCC 52600
by: Fernanda Lopes de Figueiredo, et al.
Published: (2021-04-01)

Comparative genomics of Myxococcus and Pyxidicoccus, including the description of four novel species: Myxococcus guangdongensis sp. nov., Myxococcus qinghaiensis sp. nov., Myxococcus dinghuensis sp. nov., and Pyxidicoccus xibeiensis sp. nov.
by: Chunling Wang, et al.
Published: (2022-11-01)

Comparative Genomics and Transcriptomics Analyses Reveal Divergent Plant Biomass-Degrading Strategies in Fungi
by: Jiajia Li, et al.
Published: (2023-08-01)

IPGA: A handy integrated prokaryotes genome and pan‐genome analysis web service
by: Dongmei Liu, et al.
Published: (2022-12-01)

Genomic comparison between two Inonotus hispidus strains isolated from growing in different tree species
by: Qingchun Wang, et al.
Published: (2023-07-01)

Reference-agnostic representation and visualization of pan-genomes
by: Qihua Liang, et al.
Published: (2021-10-01)

Complete genome sequencing and comparative genome characterization of the lignocellulosic biomass degrading bacterium Pseudomonas stutzeri MP4687 from cattle rumen
by: Maulik Patel, et al.
Published: (2020-12-01)

Comparative Genomic Analysis of Agarolytic <i>Flavobacterium faecale</i> WV33<sup>T</sup>
by: Jun Ho Lee, et al.
Published: (2022-09-01)

Sugar Metabolism of the First Thermophilic Planctomycete Thermogutta terrifontis: Comparative Genomic and Transcriptomic Approaches
by: Alexander G. Elcheninov, et al.
Published: (2017-11-01)

Genomic characterization of Trichoderma atrobrunneum (T. harzianum species complex) ITEM 908: insight into the genetic endowment of a multi-target biocontrol strain
by: Francesca Fanelli, et al.
Published: (2018-09-01)

Complete genome sequences and comparative secretomic analysis for the industrially cultivated edible mushroom Lyophyllum decastes reveals insights on evolution and lignocellulose degradation potential
by: Lili Xu, et al.
Published: (2023-03-01)

Genomic characteristics and comparative genomics analysis of the endophytic fungus Sarocladium brachiariae
by: Yang Yang, et al.
Published: (2019-10-01)

Efficient whole-cell-catalyzing cellulose saccharification using engineered Clostridium thermocellum
by: Jie Zhang, et al.
Published: (2017-05-01)

The Structure of Stable Cellulolytic Consortia Isolated from Natural Lignocellulosic Substrates
by: Grigory V. Gladkov, et al.
Published: (2022-09-01)

The xyl-doc gene cluster of Ruminiclostridium cellulolyticum encodes GH43- and GH62-α-l-arabinofuranosidases with complementary modes of action
by: Mohamed Mroueh, et al.
Published: (2019-06-01)

Ethanol tolerance in engineered strains of Clostridium thermocellum
by: Daniel G. Olson, et al.
Published: (2023-09-01)

Whole Genome Sequencing and Comparative Genomics of Indian Isolates of Wheat Spot Blotch Pathogen <i>Bipolaris sorokiniana</i> Reveals Expansion of Pathogenicity Gene Clusters
by: Sagar Yadav, et al.
Published: (2022-12-01)

Function analysis of 5′-UTR of the cellulosomal xyl-doc cluster in Clostridium papyrosolvens
by: Xia Zou, et al.
Published: (2018-02-01)

Characterization and in-depth genome analysis of a halotolerant probiotic bacterium Paenibacillus sp. S-12, a multifarious bacterium isolated from Rauvolfia serpentina
by: Rajnish Prakash Singh, et al.
Published: (2023-07-01)

Data on draft genome sequence of Caldanaerobacter sp. strain 1523vc, a thermophilic bacterium, isolated from a hot spring of Uzon Caldera, (Kamchatka, Russia)
by: A.A. Korzhenkov, et al.
Published: (2020-12-01)

Construction of consolidated bio-saccharification biocatalyst and process optimization for highly efficient lignocellulose solubilization
by: Shiyue Liu, et al.
Published: (2019-02-01)

Pan-genomic and comparative analysis of Pediococcus pentosaceus focused on the in silico assessment of pediocin-like bacteriocins
by: Iago Rodrigues Blanco, et al.
Published: (2022-01-01)

The pan-genome of Mycobacterium avium subsp. paratuberculosis (Map) confirms ancestral lineage and reveals gene rearrangements within Map Type S
by: Rachel Hodgeman, et al.
Published: (2023-10-01)

Metagenomic Analysis of the Gut Microbiome of the Common Black Slug Arion ater in Search of Novel Lignocellulose Degrading Enzymes
by: Ryan Joynson, et al.
Published: (2017-11-01)

Transcriptomic characterization of Caecomyces churrovis: a novel, non-rhizoid-forming lignocellulolytic anaerobic fungus
by: John K. Henske, et al.
Published: (2017-12-01)

First steps towards mitochondrial pan-genomics: detailed analysis of Fusarium graminearum mitogenomes
by: Balázs Brankovics, et al.
Published: (2018-12-01)

Myxobacterial Genomics and Post-Genomics: A Review of Genome Biology, Genome Sequences and Related ‘Omics Studies
by: David E. Whitworth, et al.
Published: (2021-10-01)

The Genome of the Medicinal Macrofungus Sanghuang Provides Insights Into the Synthesis of Diverse Secondary Metabolites
by: Ying Shao, et al.
Published: (2020-01-01)