The complete chloroplast genome sequence of Rubus coreanus, an excellent diseases-resistant resource
The wild Rubus species Rubus coreanus, which is widely distributed in east Asia, shows great promise as a genetic resource for breeding. The complete chloroplast genome of the species is 155,405 bp in length, with an 85,322 bp large single copy (LSC) and a 17,693 bp small single copy separated by tw...
| Main Authors: | , , , , , , , |
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| Format: | Article |
| Language: | English |
| Published: |
Taylor & Francis Group
2019-01-01
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| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2018.1546139 |
| _version_ | 1827774102448898048 |
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| author | Qing Chen Yan Wang Bo Sun Tao Chen Ya Luo Yong Zhang Xiao-Rong Wang Hao-Ru Tang |
| author_facet | Qing Chen Yan Wang Bo Sun Tao Chen Ya Luo Yong Zhang Xiao-Rong Wang Hao-Ru Tang |
| author_sort | Qing Chen |
| collection | DOAJ |
| description | The wild Rubus species Rubus coreanus, which is widely distributed in east Asia, shows great promise as a genetic resource for breeding. The complete chloroplast genome of the species is 155,405 bp in length, with an 85,322 bp large single copy (LSC) and a 17,693 bp small single copy separated by two inverted repeats. The plastid encodes a total of 132 genes, including 87 protein-coding genes, 37 tRNA genes and eight rRNA genes. The average GC content of the protein coding genes is 39.7%. Maximum-likelihood (ML)-based phylogenetic analysis indicated that the R. coreanus has the closest relationship to R. nievus. |
| first_indexed | 2024-03-11T13:33:08Z |
| format | Article |
| id | doaj.art-145d3fc4dc924da88876e3037134ad25 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:33:08Z |
| publishDate | 2019-01-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-145d3fc4dc924da88876e3037134ad252023-11-02T16:07:24ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592019-01-014121621710.1080/23802359.2018.15461391546139The complete chloroplast genome sequence of Rubus coreanus, an excellent diseases-resistant resourceQing Chen0Yan Wang1Bo Sun2Tao Chen3Ya Luo4Yong Zhang5Xiao-Rong Wang6Hao-Ru Tang7Sichuan Agricultural UniversitySichuan Agricultural UniversitySichuan Agricultural UniversitySichuan Agricultural UniversitySichuan Agricultural UniversitySichuan Agricultural UniversitySichuan Agricultural UniversitySichuan Agricultural UniversityThe wild Rubus species Rubus coreanus, which is widely distributed in east Asia, shows great promise as a genetic resource for breeding. The complete chloroplast genome of the species is 155,405 bp in length, with an 85,322 bp large single copy (LSC) and a 17,693 bp small single copy separated by two inverted repeats. The plastid encodes a total of 132 genes, including 87 protein-coding genes, 37 tRNA genes and eight rRNA genes. The average GC content of the protein coding genes is 39.7%. Maximum-likelihood (ML)-based phylogenetic analysis indicated that the R. coreanus has the closest relationship to R. nievus.http://dx.doi.org/10.1080/23802359.2018.1546139rubus coreanuschloroplast genome sequencephylogeny |
| spellingShingle | Qing Chen Yan Wang Bo Sun Tao Chen Ya Luo Yong Zhang Xiao-Rong Wang Hao-Ru Tang The complete chloroplast genome sequence of Rubus coreanus, an excellent diseases-resistant resource Mitochondrial DNA. Part B. Resources rubus coreanus chloroplast genome sequence phylogeny |
| title | The complete chloroplast genome sequence of Rubus coreanus, an excellent diseases-resistant resource |
| title_full | The complete chloroplast genome sequence of Rubus coreanus, an excellent diseases-resistant resource |
| title_fullStr | The complete chloroplast genome sequence of Rubus coreanus, an excellent diseases-resistant resource |
| title_full_unstemmed | The complete chloroplast genome sequence of Rubus coreanus, an excellent diseases-resistant resource |
| title_short | The complete chloroplast genome sequence of Rubus coreanus, an excellent diseases-resistant resource |
| title_sort | complete chloroplast genome sequence of rubus coreanus an excellent diseases resistant resource |
| topic | rubus coreanus chloroplast genome sequence phylogeny |
| url | http://dx.doi.org/10.1080/23802359.2018.1546139 |
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