The next-generation sequencing reveals the complete mitochondrial genome of Alosa sapidissima (Perciformes: Clupeidae) with phylogenetic consideration
The complete mitochondrial genome of the Alosa sapidissima is presented in this study. The mitochondrial genome is 16,741 bp long and consists of 13 protein-coding genes, 2 rRNA genes, 22 tRNA genes, and a control region. The gene order and composition of Epinephelus awoara mitochondrial genome was...
| Main Authors: | , , , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2017-01-01
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| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2017.1331322 |
| _version_ | 1797640852888092672 |
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| author | Jing Wang Zeshu Yu Xiang Wang Shaosheng Yang Dongguo Zhang Yong Zhang |
| author_facet | Jing Wang Zeshu Yu Xiang Wang Shaosheng Yang Dongguo Zhang Yong Zhang |
| author_sort | Jing Wang |
| collection | DOAJ |
| description | The complete mitochondrial genome of the Alosa sapidissima is presented in this study. The mitochondrial genome is 16,741 bp long and consists of 13 protein-coding genes, 2 rRNA genes, 22 tRNA genes, and a control region. The gene order and composition of Epinephelus awoara mitochondrial genome was similar to that of most other vertebrates. The nucleotide compositions of the light strand in descending order is 28.79% of G, 28.39% of T, 24.94% of A, and 17.88% of C. With the exception of the NADH dehydrogenase subunit 6 (ND6) and 8 tRNA genes, all other mitochondrial genes are encoded on the heavy strand. The phylogenetic analysis by maximum-likelihood (ML) method showed that the A. sapidissima has the closer relationship to between the A. alosa and A. pseudoharengus in the phylogenetic relationship. |
| first_indexed | 2024-03-11T13:37:01Z |
| format | Article |
| id | doaj.art-14a36c69d89442cd9f52265badeede05 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:37:01Z |
| publishDate | 2017-01-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-14a36c69d89442cd9f52265badeede052023-11-02T15:42:56ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592017-01-012130430610.1080/23802359.2017.13313221331322The next-generation sequencing reveals the complete mitochondrial genome of Alosa sapidissima (Perciformes: Clupeidae) with phylogenetic considerationJing Wang0Zeshu Yu1Xiang Wang2Shaosheng Yang3Dongguo Zhang4Yong Zhang5Sun Yat-Sen UniversitySun Yat-Sen UniversitySun Yat-Sen UniversityShenzhen South Ocean Technology Co. LtdShenzhen South Ocean Technology Co. LtdSun Yat-Sen UniversityThe complete mitochondrial genome of the Alosa sapidissima is presented in this study. The mitochondrial genome is 16,741 bp long and consists of 13 protein-coding genes, 2 rRNA genes, 22 tRNA genes, and a control region. The gene order and composition of Epinephelus awoara mitochondrial genome was similar to that of most other vertebrates. The nucleotide compositions of the light strand in descending order is 28.79% of G, 28.39% of T, 24.94% of A, and 17.88% of C. With the exception of the NADH dehydrogenase subunit 6 (ND6) and 8 tRNA genes, all other mitochondrial genes are encoded on the heavy strand. The phylogenetic analysis by maximum-likelihood (ML) method showed that the A. sapidissima has the closer relationship to between the A. alosa and A. pseudoharengus in the phylogenetic relationship.http://dx.doi.org/10.1080/23802359.2017.1331322alosa sapidissimamitochondrial genomephylogenetic analysis |
| spellingShingle | Jing Wang Zeshu Yu Xiang Wang Shaosheng Yang Dongguo Zhang Yong Zhang The next-generation sequencing reveals the complete mitochondrial genome of Alosa sapidissima (Perciformes: Clupeidae) with phylogenetic consideration Mitochondrial DNA. Part B. Resources alosa sapidissima mitochondrial genome phylogenetic analysis |
| title | The next-generation sequencing reveals the complete mitochondrial genome of Alosa sapidissima (Perciformes: Clupeidae) with phylogenetic consideration |
| title_full | The next-generation sequencing reveals the complete mitochondrial genome of Alosa sapidissima (Perciformes: Clupeidae) with phylogenetic consideration |
| title_fullStr | The next-generation sequencing reveals the complete mitochondrial genome of Alosa sapidissima (Perciformes: Clupeidae) with phylogenetic consideration |
| title_full_unstemmed | The next-generation sequencing reveals the complete mitochondrial genome of Alosa sapidissima (Perciformes: Clupeidae) with phylogenetic consideration |
| title_short | The next-generation sequencing reveals the complete mitochondrial genome of Alosa sapidissima (Perciformes: Clupeidae) with phylogenetic consideration |
| title_sort | next generation sequencing reveals the complete mitochondrial genome of alosa sapidissima perciformes clupeidae with phylogenetic consideration |
| topic | alosa sapidissima mitochondrial genome phylogenetic analysis |
| url | http://dx.doi.org/10.1080/23802359.2017.1331322 |
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