Validation of reliable reference genes for real-time PCR in human umbilical vein endothelial cells on substrates with different stiffness.
BACKGROUND:The mechanical properties of cellular microenvironments play important roles in regulating cellular functions. Studies of the molecular response of endothelial cells to alterations in substrate stiffness could shed new light on the development of cardiovascular disease. Quantitative real-...
| Main Authors: | , , , , , , , |
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| Format: | Article |
| Language: | English |
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Public Library of Science (PLoS)
2013-01-01
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| Series: | PLoS ONE |
| Online Access: | http://europepmc.org/articles/PMC3696109?pdf=render |
| _version_ | 1819081173478932480 |
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| author | Gan Chen Lian Zhao Jiantao Feng Guoxing You Quanmei Sun Penglong Li Dong Han Hong Zhou |
| author_facet | Gan Chen Lian Zhao Jiantao Feng Guoxing You Quanmei Sun Penglong Li Dong Han Hong Zhou |
| author_sort | Gan Chen |
| collection | DOAJ |
| description | BACKGROUND:The mechanical properties of cellular microenvironments play important roles in regulating cellular functions. Studies of the molecular response of endothelial cells to alterations in substrate stiffness could shed new light on the development of cardiovascular disease. Quantitative real-time PCR is a current technique that is widely used in gene expression assessment, and its accuracy is highly dependent upon the selection of appropriate reference genes for gene expression normalization. This study aimed to evaluate and identify optimal reference genes for use in studies of the response of endothelial cells to alterations in substrate stiffness. METHODOLOGY/PRINCIPAL FINDINGS:Four algorithms, GeNorm(PLUS), NormFinder, BestKeeper, and the Comparative ΔCt method, were employed to evaluate the expression of nine candidate genes. We observed that the stability of potential reference genes varied significantly in human umbilical vein endothelial cells on substrates with different stiffness. B2M, HPRT-1, and YWHAZ are suitable for normalization in this experimental setting. Meanwhile, we normalized the expression of YAP and CTGF using various reference genes and demonstrated that the relative quantification varied according to the reference genes. CONCLUSION/SIGNIFICANCE:Consequently, our data show for the first time that B2M, HPRT-1, and YWHAZ are a set of stably expressed reference genes for accurate gene expression normalization in studies exploring the effect of subendothelial matrix stiffening on endothelial cell function. We furthermore caution against the use of GAPDH and ACTB for gene expression normalization in this experimental setting because of the low expression stability in this study. |
| first_indexed | 2024-12-21T19:56:34Z |
| format | Article |
| id | doaj.art-14c3c62a642e4daba2504f5495cb1585 |
| institution | Directory Open Access Journal |
| issn | 1932-6203 |
| language | English |
| last_indexed | 2024-12-21T19:56:34Z |
| publishDate | 2013-01-01 |
| publisher | Public Library of Science (PLoS) |
| record_format | Article |
| series | PLoS ONE |
| spelling | doaj.art-14c3c62a642e4daba2504f5495cb15852022-12-21T18:52:05ZengPublic Library of Science (PLoS)PLoS ONE1932-62032013-01-0186e6736010.1371/journal.pone.0067360Validation of reliable reference genes for real-time PCR in human umbilical vein endothelial cells on substrates with different stiffness.Gan ChenLian ZhaoJiantao FengGuoxing YouQuanmei SunPenglong LiDong HanHong ZhouBACKGROUND:The mechanical properties of cellular microenvironments play important roles in regulating cellular functions. Studies of the molecular response of endothelial cells to alterations in substrate stiffness could shed new light on the development of cardiovascular disease. Quantitative real-time PCR is a current technique that is widely used in gene expression assessment, and its accuracy is highly dependent upon the selection of appropriate reference genes for gene expression normalization. This study aimed to evaluate and identify optimal reference genes for use in studies of the response of endothelial cells to alterations in substrate stiffness. METHODOLOGY/PRINCIPAL FINDINGS:Four algorithms, GeNorm(PLUS), NormFinder, BestKeeper, and the Comparative ΔCt method, were employed to evaluate the expression of nine candidate genes. We observed that the stability of potential reference genes varied significantly in human umbilical vein endothelial cells on substrates with different stiffness. B2M, HPRT-1, and YWHAZ are suitable for normalization in this experimental setting. Meanwhile, we normalized the expression of YAP and CTGF using various reference genes and demonstrated that the relative quantification varied according to the reference genes. CONCLUSION/SIGNIFICANCE:Consequently, our data show for the first time that B2M, HPRT-1, and YWHAZ are a set of stably expressed reference genes for accurate gene expression normalization in studies exploring the effect of subendothelial matrix stiffening on endothelial cell function. We furthermore caution against the use of GAPDH and ACTB for gene expression normalization in this experimental setting because of the low expression stability in this study.http://europepmc.org/articles/PMC3696109?pdf=render |
| spellingShingle | Gan Chen Lian Zhao Jiantao Feng Guoxing You Quanmei Sun Penglong Li Dong Han Hong Zhou Validation of reliable reference genes for real-time PCR in human umbilical vein endothelial cells on substrates with different stiffness. PLoS ONE |
| title | Validation of reliable reference genes for real-time PCR in human umbilical vein endothelial cells on substrates with different stiffness. |
| title_full | Validation of reliable reference genes for real-time PCR in human umbilical vein endothelial cells on substrates with different stiffness. |
| title_fullStr | Validation of reliable reference genes for real-time PCR in human umbilical vein endothelial cells on substrates with different stiffness. |
| title_full_unstemmed | Validation of reliable reference genes for real-time PCR in human umbilical vein endothelial cells on substrates with different stiffness. |
| title_short | Validation of reliable reference genes for real-time PCR in human umbilical vein endothelial cells on substrates with different stiffness. |
| title_sort | validation of reliable reference genes for real time pcr in human umbilical vein endothelial cells on substrates with different stiffness |
| url | http://europepmc.org/articles/PMC3696109?pdf=render |
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