The complete chloroplast genome sequence of Phlegmariurus carinatus
The first complete chloroplast genome (cpDNA) sequence of Phlegmariurus carinatus was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 150,349 bp in length, contains a large single-copy region (LSC) of 100,582 bp and a small single-copy region (SSC) of 19,455 bp, w...
| Main Authors: | , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2019-07-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2019.1688720 |
| _version_ | 1827773172419657728 |
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| author | Ting Luo Yunqing Li Xiaolong Yuan Yi Wang |
| author_facet | Ting Luo Yunqing Li Xiaolong Yuan Yi Wang |
| author_sort | Ting Luo |
| collection | DOAJ |
| description | The first complete chloroplast genome (cpDNA) sequence of Phlegmariurus carinatus was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 150,349 bp in length, contains a large single-copy region (LSC) of 100,582 bp and a small single-copy region (SSC) of 19,455 bp, which were separated by a pair of inverted repeat (IR) regions of 15,156 bp. The genome contains 120 genes, including 79 protein-coding genes, 8 ribosomal RNA genes, and 33 transfer RNA genes. The overall GC content of the whole genome is 34.0%, and the corresponding values of the LSC, SSC, and IR regions are 31.6%, 30.4%, and 44.2%, respectively. Further phylogenomic analysis showed that P. carinatus and Huperzia serrata clustered in a clade in family Lycopodiaceae. |
| first_indexed | 2024-03-11T13:19:11Z |
| format | Article |
| id | doaj.art-14e241f9e65c4dc790c63c3c83019bc8 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:19:11Z |
| publishDate | 2019-07-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-14e241f9e65c4dc790c63c3c83019bc82023-11-03T10:38:51ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592019-07-01423977397810.1080/23802359.2019.16887201688720The complete chloroplast genome sequence of Phlegmariurus carinatusTing Luo0Yunqing Li1Xiaolong Yuan2Yi Wang3Yunnan Academy of ForestryYunnan Academy of ForestryYunnan Academy of ForestryYunnan Academy of ForestryThe first complete chloroplast genome (cpDNA) sequence of Phlegmariurus carinatus was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 150,349 bp in length, contains a large single-copy region (LSC) of 100,582 bp and a small single-copy region (SSC) of 19,455 bp, which were separated by a pair of inverted repeat (IR) regions of 15,156 bp. The genome contains 120 genes, including 79 protein-coding genes, 8 ribosomal RNA genes, and 33 transfer RNA genes. The overall GC content of the whole genome is 34.0%, and the corresponding values of the LSC, SSC, and IR regions are 31.6%, 30.4%, and 44.2%, respectively. Further phylogenomic analysis showed that P. carinatus and Huperzia serrata clustered in a clade in family Lycopodiaceae.http://dx.doi.org/10.1080/23802359.2019.1688720phlegmariurus carinatuschloroplastillumina sequencingphylogenetic analysis |
| spellingShingle | Ting Luo Yunqing Li Xiaolong Yuan Yi Wang The complete chloroplast genome sequence of Phlegmariurus carinatus Mitochondrial DNA. Part B. Resources phlegmariurus carinatus chloroplast illumina sequencing phylogenetic analysis |
| title | The complete chloroplast genome sequence of Phlegmariurus carinatus |
| title_full | The complete chloroplast genome sequence of Phlegmariurus carinatus |
| title_fullStr | The complete chloroplast genome sequence of Phlegmariurus carinatus |
| title_full_unstemmed | The complete chloroplast genome sequence of Phlegmariurus carinatus |
| title_short | The complete chloroplast genome sequence of Phlegmariurus carinatus |
| title_sort | complete chloroplast genome sequence of phlegmariurus carinatus |
| topic | phlegmariurus carinatus chloroplast illumina sequencing phylogenetic analysis |
| url | http://dx.doi.org/10.1080/23802359.2019.1688720 |
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