Genome assembly of the Korean intertidal mud-creeper Batillaria attramentaria
Abstract Batillaridae is a common gastropod family that occurs abundantly in the shallow coastal zone of the intertidal mudflats of the northwest Pacific Ocean, Australasia, and North America. In this family, Batillaria attramentaria is known for its biological invasion and colonization in estuarine...
| Main Authors: | , , , , , |
|---|---|
| Format: | Article |
| Language: | English |
| Published: |
Nature Portfolio
2023-07-01
|
| Series: | Scientific Data |
| Online Access: | https://doi.org/10.1038/s41597-023-02403-9 |
| _version_ | 1797769618683592704 |
|---|---|
| author | Ajit Kumar Patra Phuong-Thao Ho Siyeong Jun Seung Jae Lee Yuseob Kim Yong-Jin Won |
| author_facet | Ajit Kumar Patra Phuong-Thao Ho Siyeong Jun Seung Jae Lee Yuseob Kim Yong-Jin Won |
| author_sort | Ajit Kumar Patra |
| collection | DOAJ |
| description | Abstract Batillaridae is a common gastropod family that occurs abundantly in the shallow coastal zone of the intertidal mudflats of the northwest Pacific Ocean, Australasia, and North America. In this family, Batillaria attramentaria is known for its biological invasion and colonization in estuarine and intertidal zones. It can endure and adapt the harsh intertidal conditions such as frequent temperature alteration, salinity, and air exposure. Therefore, we sequenced and assembled this Korean batillariid genome to get insight into its intertidal adaptive features. Approximately 53 Gb of DNA sequences were generated, and 863 scaffolds were assembled into a draft genome of 0.715 Gb with 97.1% BUSCO completeness value. A total of 40,596 genes were predicted. We estimated that B. attramentaria and Conus consors diverged about 230 million years ago (MYA) based on the phylogenetic analysis of closely related gastropod species. This genome study sets the footstep for genomics studies among native and introduced Batillaria populations and the Batillaridae family members. |
| first_indexed | 2024-03-12T21:11:36Z |
| format | Article |
| id | doaj.art-1504b809f09a4ff1936f4bdb2c947262 |
| institution | Directory Open Access Journal |
| issn | 2052-4463 |
| language | English |
| last_indexed | 2024-03-12T21:11:36Z |
| publishDate | 2023-07-01 |
| publisher | Nature Portfolio |
| record_format | Article |
| series | Scientific Data |
| spelling | doaj.art-1504b809f09a4ff1936f4bdb2c9472622023-07-30T11:07:08ZengNature PortfolioScientific Data2052-44632023-07-011011710.1038/s41597-023-02403-9Genome assembly of the Korean intertidal mud-creeper Batillaria attramentariaAjit Kumar Patra0Phuong-Thao Ho1Siyeong Jun2Seung Jae Lee3Yuseob Kim4Yong-Jin Won5Department of Life Science, Division of EcoScience, Ewha Womans UniversityDepartment of Life Science, Division of EcoScience, Ewha Womans UniversityDepartment of Life Science, Division of EcoScience, Ewha Womans UniversityBioinformatics Team, DNA LinkDepartment of Life Science, Division of EcoScience, Ewha Womans UniversityDepartment of Life Science, Division of EcoScience, Ewha Womans UniversityAbstract Batillaridae is a common gastropod family that occurs abundantly in the shallow coastal zone of the intertidal mudflats of the northwest Pacific Ocean, Australasia, and North America. In this family, Batillaria attramentaria is known for its biological invasion and colonization in estuarine and intertidal zones. It can endure and adapt the harsh intertidal conditions such as frequent temperature alteration, salinity, and air exposure. Therefore, we sequenced and assembled this Korean batillariid genome to get insight into its intertidal adaptive features. Approximately 53 Gb of DNA sequences were generated, and 863 scaffolds were assembled into a draft genome of 0.715 Gb with 97.1% BUSCO completeness value. A total of 40,596 genes were predicted. We estimated that B. attramentaria and Conus consors diverged about 230 million years ago (MYA) based on the phylogenetic analysis of closely related gastropod species. This genome study sets the footstep for genomics studies among native and introduced Batillaria populations and the Batillaridae family members.https://doi.org/10.1038/s41597-023-02403-9 |
| spellingShingle | Ajit Kumar Patra Phuong-Thao Ho Siyeong Jun Seung Jae Lee Yuseob Kim Yong-Jin Won Genome assembly of the Korean intertidal mud-creeper Batillaria attramentaria Scientific Data |
| title | Genome assembly of the Korean intertidal mud-creeper Batillaria attramentaria |
| title_full | Genome assembly of the Korean intertidal mud-creeper Batillaria attramentaria |
| title_fullStr | Genome assembly of the Korean intertidal mud-creeper Batillaria attramentaria |
| title_full_unstemmed | Genome assembly of the Korean intertidal mud-creeper Batillaria attramentaria |
| title_short | Genome assembly of the Korean intertidal mud-creeper Batillaria attramentaria |
| title_sort | genome assembly of the korean intertidal mud creeper batillaria attramentaria |
| url | https://doi.org/10.1038/s41597-023-02403-9 |
| work_keys_str_mv | AT ajitkumarpatra genomeassemblyofthekoreanintertidalmudcreeperbatillariaattramentaria AT phuongthaoho genomeassemblyofthekoreanintertidalmudcreeperbatillariaattramentaria AT siyeongjun genomeassemblyofthekoreanintertidalmudcreeperbatillariaattramentaria AT seungjaelee genomeassemblyofthekoreanintertidalmudcreeperbatillariaattramentaria AT yuseobkim genomeassemblyofthekoreanintertidalmudcreeperbatillariaattramentaria AT yongjinwon genomeassemblyofthekoreanintertidalmudcreeperbatillariaattramentaria |